hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj01453/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0227  ( 271 res)   mfj01453

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TPR      Tetratricopeptide repeats                       28.6    0.00086   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TPR        1/3     108   141 ..     1    34 []     5.1  1.3e+02
TPR        2/3     177   212 ..     1    34 []     5.0  1.4e+02
TPR        3/3     213   246 ..     1    34 []    27.7   0.0016

Alignments of top-scoring domains:
TPR: domain 1 of 3, from 108 to 141: score 5.1, E = 1.3e+02
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a  ++ +G  ++k +++ eAi  y +AL         
   mKIAA0227   108    AHEFKSQGAQCYKDKKFREAIGKYHRALLELKGL    141  

TPR: domain 2 of 3, from 177 to 212: score 5.0, E = 1.4e+02
                   *->aealynlGnaylklg..dydeAieyyekALeldPnn<-*
                      +++++ l+ ++l+ +  +y+   ey+ k+L+ + +n   
   mKIAA0227   177    IDCYNSLAACLLQAElvNYERVKEYCLKVLKKEGEN    212  

TPR: domain 3 of 3, from 213 to 246: score 27.7, E = 0.0016
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                       +aly+ G+a+++lgdyd+A+ y+++A + +P++   
   mKIAA0227   213    FKALYRSGVAFYHLGDYDKALYYLKEARTRQPTD    246  

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