hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj01453/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0227  ( 271 res)   mfj01453

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TPR_2    Tetratricopeptide repeat                        36.7    5.2e-07   2
TPR_1    Tetratricopeptide repeat                        25.7     0.0011   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TPR_1      1/3     108   141 ..     1    34 []     0.7       29
TPR_2      1/2     108   141 ..     1    34 []     9.1       19
TPR_1      2/3     177   212 ..     1    34 []     4.1       11
TPR_1      3/3     213   246 ..     1    34 []    30.5    4e-05
TPR_2      2/2     213   246 ..     1    34 []    31.5  1.9e-05

Alignments of top-scoring domains:
TPR_1: domain 1 of 3, from 108 to 141: score 0.7, E = 29
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      a  ++  G+ ++k +k+ eAi  y +AL         
   mKIAA0227   108    AHEFKSQGAQCYKDKKFREAIGKYHRALLELKGL    141  

TPR_2: domain 1 of 2, from 108 to 141: score 9.1, E = 19
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                      a     +G  +yk +++ eA+  y +Al   ++    
   mKIAA0227   108    AHEFKSQGAQCYKDKKFREAIGKYHRALLELKGL    141  

TPR_1: domain 2 of 3, from 177 to 212: score 4.1, E = 11
                   *->aeayynlGnaylklg..kydeAieayekALeldPnn<-*
                       ++y+ l++++l+ +  +y+   e++ k+L+ + +n   
   mKIAA0227   177    IDCYNSLAACLLQAElvNYERVKEYCLKVLKKEGEN    212  

TPR_1: domain 3 of 3, from 213 to 246: score 30.5, E = 4e-05
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                       +a+y+ G+a+++lg+yd+A+ ++++A   +P++   
   mKIAA0227   213    FKALYRSGVAFYHLGDYDKALYYLKEARTRQPTD    246  

TPR_2: domain 2 of 2, from 213 to 246: score 31.5, E = 1.9e-05
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                      ++aly+ G+a y+lgdy++Al ++++A    P++   
   mKIAA0227   213    FKALYRSGVAFYHLGDYDKALYYLKEARTRQPTD    246  

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