hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg04132/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0224  ( 1224 res)   mpg04132

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DEXDc    DEAD-like helicases superfamily, catalytic d   127.6    1.4e-33   1
HELICc   helicase superfamily c-terminal domain          80.2    2.5e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DEXDc      1/1     534   718 ..     1   219 []   127.6  1.4e-33
HELICc     1/1     762   865 ..     1    86 []    80.2  2.5e-19

Alignments of top-scoring domains:
DEXDc: domain 1 of 1, from 534 to 718: score 127.6, E = 1.4e-33
                   *->gf.klrpyQkeaipwllegrdvilaapTGsGKTlafllpllellkkg
                       + + +++Q+e + +++++  vi++++TGsGKT++++++l+e ++  
   mKIAA0224   534    QYlPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYT- 579  

                   kplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvvgl
                           +++ + +++P+r++a+ +a+++++++          + ++g 
   mKIAA0224   580 --------DYGMIGCTQPRRVAAMSVAKRVSEEM----------GGNLGE 611  

                   ygG.sktkekeqlrklksgktdilvtTpgrLldll.ngkglsl.nldlvi
                     G  +     ++++++s++t i ++T g+Ll++  ++   +l++++ vi
   mKIAA0224   612 EVGyAI-----RFEDCTSENTLIKYMTDGILLRESlREA--DLdHYSAVI 654  

                   lDEaHrlldmgsggdhgfgdqle.llkrl...pknrqrlllSATppeien
                   +DEaH+++         ++d+l +ll+++  +++++++++ SAT+ + e+
   mKIAA0224   655 MDEAHERS--------LNTDVLFgLLREVvarRSDLKLIVTSATM-DAEK 695  

                   llklflnlpelfpnpvfisvgftlepieqf<-*
                   +++ f+n       p+f ++g+  +p+++    
   mKIAA0224   696 FAAFFGN------VPIFHIPGR-TFPVDIL    718  

HELICc: domain 1 of 1, from 762 to 865: score 80.2, E = 2.5e-19
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgkikvLva
                      d++ e+L+el  +p + v++++++l+++ + +i++k ++g +k++va
   mKIAA0224   762    DQIVEHLEELENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVA 808  

                   TdvaerGlDipgvdlVInydl..................pwspasyiQRi
                   T++ae++l+++g+ +VI+ +  + +  +++ + +  +  p+s a++ QR+
   mKIAA0224   809 TNIAETSLTVDGIMFVIDSGYcklkvfnprigmdalqiyPISQANANQRS 858  

                   GRaGRaG<-*
                   GRaGR G   
   mKIAA0224   859 GRAGRTG    865  

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