hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mtj/mtj01063/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0223  ( 964 res)   mtj01063

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGAP   GTPase-activator protein for Rho-like GTPase   258.7    4.5e-73   1
FCH      Fes/CIP4 homology domain                        71.6      1e-16   1
C1       Protein kinase C conserved region 1 (C1) dom    42.2    7.1e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FCH        1/1     121   208 ..     1   103 []    71.6    1e-16
C1         1/1     546   592 ..     1    61 []    42.2  7.1e-08
RhoGAP     1/1     617   816 ..     1   193 []   258.7  4.5e-73

Alignments of top-scoring domains:
FCH: domain 1 of 1, from 121 to 208: score 71.6, E = 1e-16
                   *->mgfwselwsddGfeaLlsrlknglrlledlkkflreRakiEeeYAkk
                      + +++e+    G++a+l++ k+++r+++dl+++l++R ++E+e+Ak+
   mKIAA0223   121    LLQRCEG----GVDAALQYAKDMARYMKDLISYLEKRTTLEMEFAKG 163  

                   Lqklskkyfnkkssvgdlravreteselgslkkswevllsetdalakshl
                   Lqk +++          +r++++ e+++  l  +++  l++  ++++ + 
   mKIAA0223   164 LQKVVHN----------CRQSVTHEPHMPLL-SIYSLALEQDLEFGHGMV 202  

                   qlsedL<-*
                   q +  L   
   mKIAA0223   203 QAAGTL    208  

C1: domain 1 of 1, from 546 to 592: score 42.2, E = 7.1e-08
                   *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC
                       +++ r+ ++p++C+ C++++++         g +C+eC+++cHkkC
   mKIAA0223   546    RTHRLRKLrTPAKCRECNSYVYFQ--------GAECEECCLACHKKC 584  

                   aekvpaqshksglsC<-*
                   +e ++         C   
   mKIAA0223   585 LETLAI-------QC    592  

RhoGAP: domain 1 of 1, from 617 to 816: score 258.7, E = 4.5e-73
                   *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged.
                      + +P iv kC++++e+r+l+t+GIYRv+G+k+rv++L++af++g++ 
   mKIAA0223   617    DGVPFIVKKCVCEIERRALHTKGIYRVNGVKTRVEKLCQAFENGKEl 663  

                   dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie
                   +             +l+++++hd++ +LKlyLR+LPePL+ f+ y+e++ 
   mKIAA0223   664 V-------------ELSQASPHDISNVLKLYLRQLPEPLISFRFYHELVG 700  

                   aaklyq.i.e.a.t.srk.q.s.eksedeeerlralrellslLPpanrat
                   +ak+ ++++++a++ sr++q+++e++  + + + +lrel + LP +nrat
   mKIAA0223   701 LAKDSLkAeAeAkAaSRGrQgGsESEAATLAMVGRLRELMQDLPAENRAT 750  

                   LryLl.HLnrVaehsevNkMtarNLAivFgPtLlrpp..........ltd
                   L yLl+HL+r+ e ++ NkMt+ NL+ivFgPtLlrp++++ + + ++l+d
   mKIAA0223   751 LLYLLkHLRRIVEMEQDNKMTPGNLGIVFGPTLLRPRptdatvslssLVD 800  

                   ikhqnkvvetlienad<-*
                   + hq++v+etli+++    
   mKIAA0223   801 YPHQARVIETLIVHYG    816  

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