hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mtj/mtj01063/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0223  ( 964 res)   mtj01063

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGAP   RhoGAP domain                                  231.1    1.5e-65   1
C1_1     Phorbol esters/diacylglycerol binding domain    24.8    0.00046   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C1_1       1/1     548   595 ..     1    55 []    24.8  0.00046
RhoGAP     1/1     620   792 ..     1   155 []   231.1  1.5e-65

Alignments of top-scoring domains:
C1_1: domain 1 of 1, from 548 to 595: score 24.8, E = 0.00046
                   *->HhFvhrwnfkqptfCdhCgellwgslgkqGlkCswCklnvHkrChek
                      H+ +     + p++C  C++ +    ++qG  C++C l +Hk+C e 
   mKIAA0223   548    HRLRKL---RTPAKCRECNSYV----YFQGAECEECCLACHKKCLET 587  

                   VppeCgcg<-*
                   +++ Cg++   
   mKIAA0223   588 LAIQCGHK    595  

RhoGAP: domain 1 of 1, from 620 to 792: score 231.1, E = 1.5e-65
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln
                      P+iv kC++++e+r+L+t+GIyRv+G k+r+++L++af++g++ +  
   mKIAA0223   620    PFIVKKCVCEIERRALHTKGIYRVNGVKTRVEKLCQAFENGKELV-- 664  

                   dleeedvhvvAslLKlFLReLPePLltfelyeefi.eaaaksedeeer..
                   +l++ ++h+++++LKl+LR+LPePL++f++y+e++++ a +s ++e+  +
   mKIAA0223   665 ELSQASPHDISNVLKLYLRQLPEPLISFRFYHELVgL-AKDSLKAEAEak 713  

                   ...................lealrellrkLPpaNrdtLryLlahLnrVaq
                     +++++++++++  +   + +lrel + LP +Nr+tL yLl+hL+r+ +
   mKIAA0223   714 aasrgrqggseseaatlamVGRLRELMQDLPAENRATLLYLLKHLRRIVE 763  

                   nsevNkMtahNLAivFgPtLlrppdgdsad<-*
                    +++NkMt+ NL+ivFgPtLlrp+++  a+   
   mKIAA0223   764 MEQDNKMTPGNLGIVFGPTLLRPRPT-DAT    792  

//