hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj00318/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0222  ( 423 res)   mfj00318

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                     28.2     0.0011   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/2      19    42 ..     1    23 []     7.5       44
ZnF_C2H2   2/2     358   380 ..     1    23 []    27.1   0.0024

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 2, from 19 to 42: score 7.5, E = 44
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      + Cp+ C  ++  ++ L  H r  H   
   mKIAA0222    19    HPCPY-CTHKTYYPeVLWMHKRiWH    42   

ZnF_C2H2: domain 2 of 2, from 358 to 380: score 27.1, E = 0.0024
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C + Cgksf+++++L+ H+r H   
   mKIAA0222   358    FVCVE-CGKSFHQPsQLRAHLRAH    380  

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