hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj00318/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0222  ( 423 res)   mfj00318

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                          43.2    5.8e-09   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/2      19    42 ..     1    24 []    14.7      2.3
zf-C2H2    2/2     358   380 ..     1    24 []    33.1  6.3e-06

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 2, from 19 to 42: score 14.7, E = 2.3
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      + Cp +C  +   ++ L +H+r+ H   
   mKIAA0222    19    HPCP-YCTHKTYYPEVLWMHKRIwH    42   

zf-C2H2: domain 2 of 2, from 358 to 380: score 33.1, E = 6.3e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C  +CgksF ++s+L++Hlr H   
   mKIAA0222   358    FVCV-ECGKSFHQPSQLRAHLRAH    380  

//