hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj00945/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0217  ( 749 res)   mfj00945

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
La       La domain                                       95.1    1.4e-24   1
RRM_1    RNA recognition motif. (a.k.a. RRM, RBD, or      0.8       0.18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
La         1/1     170   227 ..     1    65 []    95.1  1.4e-24
RRM_1      1/1     248   316 ..     1    74 []     0.8     0.18

Alignments of top-scoring domains:
La: domain 1 of 1, from 170 to 227: score 95.1, E = 1.4e-24
                   *->ilkQvEYYFSDeNLpkDkFLrkqmdknkdGyVPisliasFkRvkkLt
                      ++k +E++ S+eNL+ D++L++qmd+  d+yVPi+++a+  ++kkL+
   mKIAA0217   170    LKKTLEFCLSRENLASDMYLISQMDS--DQYVPITTVANLDHIKKLS 214  

                   tdvdgtdvklIveALreS<-*
                   tdvd     lIve+Lr+    
   mKIAA0217   215 TDVD-----LIVEVLRSL    227  

RRM_1: domain 1 of 1, from 248 to 316: score 0.8, E = 0.18
                   *->lfVgNLppdtteedLkdlFsk..fGpiesikivrDttretgrskGfa
                      +  + ++++t  e++++lF+ ++ +++++++  ++         +  
   mKIAA0217   248    VILREISESTPVEEVEALFKGdnLPKFINCEFAYN--------DNW- 285  

                   FVeFedeedAekAldalnG..kelggrelrv<-*
                   F++Fe+e dA+ A + l ++ +++ g++++    
   mKIAA0217   286 FITFETEADAQQAYKYLREevRTFQGKPIKA    316  

//