hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm10302/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0215  ( 822 res)   mpm10302

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PHD      PHD zinc finger                                 80.0    2.8e-19   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PHD        1/2     201   247 ..     1    39 []    53.1  3.7e-11
PHD        2/2     310   365 ..     1    39 []    34.6  1.3e-05

Alignments of top-scoring domains:
PHD: domain 1 of 2, from 201 to 247: score 53.1, E = 3.7e-11
                   *->yC.vCgk......g.llqCdkgCdrwyHv.Clgppleepdg.wyCpr
                      +C+vC+++++++++++++Cd +C++++H+ C+g+ +  p+g+w+C +
   mKIAA0215   201    ICdVCRSpdseegNdMVFCD-KCNVCVHQaCYGILKI-PEGsWLCRS 245  

                   Ck<-*
                   C+   
   mKIAA0215   246 CV    247  

PHD: domain 2 of 2, from 310 to 365: score 34.6, E = 1.3e-05
                   *->yC.vCgk..g.llqCd.kgCdrwyHv.Clgpple..........epd
                      +C++C+ ++g ++qC+ k+C +++Hv+C+   +++ ++  ++++e++
   mKIAA0215   310    VCnLCKLktGaCIQCSvKSCITAFHVtCAFEHGLemktildegdEVK 356  

                   g.wyCprCk<-*
                   ++ +C +++   
   mKIAA0215   357 FkSFCLKHS    365  

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