hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg06117/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0214 ( 776 res) mbg06117 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Fzo_mitofusin fzo-like conserved region 415.6 4.7e-121 1 Dynamin_N Dynamin family 103.7 3.6e-27 1 MMR_HSR1 GTPase of unknown function -3.2 0.013 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Dynamin_N 1/1 118 278 .. 1 217 [] 103.7 3.6e-27 MMR_HSR1 1/1 116 280 .. 1 140 [] -3.2 0.013 Fzo_mitofusin 1/1 605 775 .. 1 171 [] 415.6 4.7e-121 Alignments of top-scoring domains: Dynamin_N: domain 1 of 1, from 118 to 278: score 103.7, E = 3.6e-27 *->IaVvGdqSsGKSSvLnaLlGrdfnLPhrgpgEptTrrplvTlqlges +a++G S GKS+v+na+l + LP +g+g +tT ++l + + mKIAA0214 118 VAFFGRTSNGKSTVINAMLWDKV-LP-SGIG-HTTNCFLR-VGGTDG 160 peaieivsipgavkveykdflhplkkfedfsevreeieketdriagknkg e +++ e ++ +k + +++++++ + ++ ag+ ++ mKIAA0214 161 HE--------AFLLTEGSEE---KKSVKTVNQLAHALHQDEQLHAGSMVS 199 isseGalakvsfgavkyCnfskpiileilsplvpgltLVDtPGldslSva + ++ + +++l+++l+L D+PG+d + mKIAA0214 200 V---------------------MWPNSKCPLLKDDLVLMDSPGIDV--TT 226 vgdqqPeDieeqIrelteeyiskpadiILaVvpAnvaLdlstssdealfl + d +++++++ ad++++V ++ + l ++ e++f mKIAA0214 227 ELD-----------SWIDKFC-LDADVFVLVANSES--TLMQT--EKQFF 260 arevdpkgerdktigVltKd<-* + + + i++l++ mKIAA0214 261 HKVSERLSRP--NIFILNNR 278 MMR_HSR1: domain 1 of 1, from 116 to 280: score -3.2, E = 0.013 *->lrvaivGrPNVGKSTLiNaLtgkkraiVsdyPGtTrdpnegrvel.. ++va+ Gr+ GKST iNa++ +++ s + tT +++++ mKIAA0214 116 MKVAFFGRTSNGKSTVINAMLW-DKVLPSGIGHTTNC----FLRVgg 157 .................................................. +++++ +++++++++ ++ ++ + +++++ + ++ + ++++ mKIAA0214 158 tdgheaflltegseekksvktvnqlahalhqdeqlhagsmvsvmwpnskc 207 ..dgrqiilvDTPGiiegaskgegelgertleaieeaDlilfVvDasegl + ++++l D PGi + + + +aD+ ++V ++ l mKIAA0214 208 plLKDDLVLMDSPGIDVTTELDSW-----IDKFCLDADVFVLVANSESTL 252 tedytieeDleiadllydeerernleltLqelekkgkPvilvlNKiD<-* +++++ + + + l + + ++++ N +D mKIAA0214 253 M-----QTEKQFFHK------------VSERLSRPN--IFILNNRWD 280 Fzo_mitofusin: domain 1 of 1, from 605 to 775: score 415.6, E = 4.7e-121 *->lpPlvsgnseqqemmislVtglASvtSrGSlGilvVgGvvwKavGWr +pPl++ +++q+e+m+s+VtglAS+tSr+S+GilvVgGvvwKavGWr mKIAA0214 605 MPPLPQSSLTQEELMVSMVTGLASLTSRTSMGILVVGGVVWKAVGWR 651 viavsgaLYGsLYlYERlsWTtaAKERaFKsQFvrhatekLrmvvsaTss +ia+s++LYG+LY+YERl+WTt+AKERaFK+QFv++a+ekL++++s+T+s mKIAA0214 652 LIALSFGLYGLLYVYERLTWTTKAKERAFKRQFVEYASEKLQLIISYTGS 701 nCshQvqQeLattFarLcaqVdetlrdLnnelaeLkkqIdaleslQkslK nCshQvqQeL++tFa+Lc+qVd+t+ +L++e+a+++k+++al+slQ+ +K mKIAA0214 702 NCSHQVQQELSGTFAHLCQQVDITRDNLEQEIAAMNKKVEALDSLQSRAK 751 lLRnKAvfLaseLeqFthqYLrss<-* lLRnKA++L+seL++FthqYL++s mKIAA0214 752 LLRNKAGWLDSELNMFTHQYLQPS 775 //