hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg05341/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0213 ( 1502 res) mbg05341 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- S_TKc Serine/Threonine protein kinases, catalytic 318.8 3.7e-91 1 TyrKc Tyrosine kinase, catalytic domain 40.5 1.2e-13 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TyrKc 1/1 1237 1493 .. 1 280 [] 40.5 1.2e-13 S_TKc 1/1 1237 1495 .. 1 231 [] 318.8 3.7e-91 Alignments of top-scoring domains: TyrKc: domain 1 of 1, from 1237 to 1493: score 40.5, E = 1.2e-13 *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda.....keeFlr + g k+GeG++G+Vy ++ ++++ A K ++ +++++++e + mKIAA0213 1237 WQRGNKIGEGQYGKVYTCISVdtgELMAMKEIRFQPndhktIKETAD 1283 EakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldy E+ki + kHpN+V+ +Gv ++ e ++i mEy++ G L + mKIAA0213 1284 ELKIFEGI--KHPNLVRYFGVELHR-------EEMYIFMEYCDEGTLEE- 1323 LrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkvv +r l+ + QI + L+++++vHRD+ N+ +++ + + mKIAA0213 1324 --VSRLGLQEHVIRLYTKQITVAINVLHEHGIVHRDIKGANIFLTSSGLI 1371 KIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkdgk K +DFG s +l++ ++ + ++ l mAPE++ k mKIAA0213 1372 KLGDFGCSVKLKNN-------AQTMPGE-VNST-LGTAAYMAPEVITRAK 1412 ...FtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyR +++ + D+WS G + E+ t G+ P+ + n++++ ++ G+ mKIAA0213 1413 gegHGRAADIWSLGCVVIEMVT-GKRPWHEY----EHNFQIMYKVGMGHK 1457 lpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFselverl<-* +p+Pe ++e + C + dP+ R t s+l + mKIAA0213 1458 PPIPER--------LSPEGKAFLSHCLESDPKIRWTASQLLDHA 1493 S_TKc: domain 1 of 1, from 1237 to 1495: score 318.8, E = 3.7e-91 *->YellkklGkGaFGkVylardkktgrlvAiKvik.........erilr ++ ++k+G+G +GkVy ++ ++tg+l+A+K+i+ +++++++ + + mKIAA0213 1237 WQRGNKIGEGQYGKVYTCISVDTGELMAMKEIRfqpndhktiKETAD 1283 EikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrr E+ki + +HPN+V++++v +++++y++mEyc+ G+L ++ + mKIAA0213 1284 ELKIFEGiKHPNLVRYFGVELHrEEMYIFMEYCDE--GTLEEVSRLG--- 1328 glrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKl l E+++r y++Qi a++ LH++gI+HRD+K +Ni+L+s++ +Kl mKIAA0213 1329 -----LQEhVIRLYTKQITVAINVLHEHGIVHRDIKGANIFLTSsgLIKL 1373 aDFGlArql...........ttfvGTpeYmAPEvl......gYgkpavDi +DFG + +l+++ ++ +++ ++ GT YmAPEv+++ +++g+g+ a+Di mKIAA0213 1374 GDFGCSVKLknnaqtmpgevNSTLGTAAYMAPEVItrakgeGHGR-AADI 1422 WSlGcilyElltGkpPFp....qldlifkkig..........SpeakdLi WSlGc+++E++tGk P+++ +++ + ++k+ ++++++ +++ Spe+k ++ mKIAA0213 1423 WSLGCVVIEMVTGKRPWHeyehNFQIMYKVGMghkppiperlSPEGKAFL 1472 kklLvkdPekRlta.eaLedeldikaHPff<-* +++L+ dP+ R+ta+++L H f+ mKIAA0213 1473 SHCLESDPKIRWTAsQLLD-------HAFV 1495 //