hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file: /cdna4/rodent/full/goal/mpm/mpm11220/w3open/interpro/cnk_1/seq.in
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Query: mKIAA0211 ( 1292 res) mpm11220
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ZnF_C2H2 zinc finger 117.5 1.5e-30 13
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ZnF_C2H2 1/13 617 642 .. 1 23 [] 12.1 13
ZnF_C2H2 2/13 645 669 .. 1 23 [] 8.4 35
ZnF_C2H2 3/13 741 761 .. 1 23 [] 2.2 1.8e+02
ZnF_C2H2 4/13 770 792 .. 1 23 [] 15.8 5.3
ZnF_C2H2 5/13 798 822 .. 1 23 [] 5.6 73
ZnF_C2H2 6/13 829 852 .. 1 23 [] 16.5 3.8
ZnF_C2H2 7/13 857 880 .. 1 23 [] 12.6 12
ZnF_C2H2 8/13 922 945 .. 1 23 [] 25.2 0.0088
ZnF_C2H2 9/13 1013 1036 .. 1 23 [] 21.8 0.095
ZnF_C2H2 10/13 1043 1066 .. 1 23 [] 27.7 0.0016
ZnF_C2H2 11/13 1073 1099 .. 1 23 [] 12.8 11
ZnF_C2H2 12/13 1154 1176 .. 1 23 [] 16.7 3.4
ZnF_C2H2 13/13 1183 1206 .. 1 23 [] 17.0 2.7
Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 13, from 617 to 642: score 12.1, E = 13
*->ykCpigCgksfssk.aLkrHmr...vH<-*
y C + Cg f +++L +H+ +++vH
mKIAA0211 617 YCCLE-CGDAFALEkSLSQHYSrrsVH 642
ZnF_C2H2: domain 2 of 13, from 645 to 669: score 8.4, E = 35
*->ykCpigCg..ksfssk.aLkrHmrvH<-*
C++ C+++ f +k +L rH r H
mKIAA0211 645 VLCTL-CSktLFFFNKcSLLRHARDH 669
ZnF_C2H2: domain 3 of 13, from 741 to 761: score 2.2, E = 1.8e+02
*->ykCpigCgksfssk.aLkrHmrvH<-*
kCp+ C+k+ +++ L H +
mKIAA0211 741 TKCPE-CHKQMRDYmVLATHFQ-- 761
ZnF_C2H2: domain 4 of 13, from 770 to 792: score 15.8, E = 5.3
*->ykCpigCgksfssk.aLkrHmrvH<-*
++C++ C++ +++ ++ H+rvH
mKIAA0211 770 LTCQV-CQMLLPNQcSFCAHQRVH 792
ZnF_C2H2: domain 5 of 13, from 798 to 822: score 5.6, E = 73
*->ykCpigCgksfsskaLkrHmr...vH<-*
y Cp+ Cg ++s+ ++ H++++ H
mKIAA0211 798 YCCPE-CGVLCRSAYFQTHVKencLH 822
ZnF_C2H2: domain 6 of 13, from 829 to 852: score 16.5, E = 3.8
*->ykCpigCgksfssk.aLkrHmr.vH<-*
y+C + Cg + Lk H++++H
mKIAA0211 829 YRCIH-CGVIHLTLaLLKSHIQeRH 852
ZnF_C2H2: domain 7 of 13, from 857 to 880: score 12.6, E = 12
*->ykCpigCgksfssk.aLkrHmr.vH<-*
+kC + C++ f+++++ H ++H
mKIAA0211 857 HKCAF-CPMAFKTAsSTMDHSTtQH 880
ZnF_C2H2: domain 8 of 13, from 922 to 945: score 25.2, E = 0.0088
*->ykCpigCgksfssk.aLkrHmr.vH<-*
+kCp+ C+ f +k++L +H++++H
mKIAA0211 922 FKCPE-CPLLFLQKpELMQHVKnTH 945
ZnF_C2H2: domain 9 of 13, from 1013 to 1036: score 21.8, E = 0.095
*->ykCpigCgksfssk.aLkrHmr.vH<-*
++C++ C++ +++++++ Hm+++H
mKIAA0211 1013 WTCQE-CQEWVPDReSYVSHMKkSH 1036
ZnF_C2H2: domain 10 of 13, from 1043 to 1066: score 27.7, E = 0.0016
*->ykCpigCgksfssk.aLkrHmr.vH<-*
y C + C +sf+++++L++H+r+ H
mKIAA0211 1043 YPCRQ-CEQSFHNPsSLRKHIRnNH 1066
[output cut off at A = 10 top alignments]
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