hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm11220/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0211  ( 1292 res)   mpm11220

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                          80.6    3.1e-20  13

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/13    617   642 ..     1    24 []    10.4      9.7
zf-C2H2    2/13    645   669 ..     1    24 []    -0.8  1.2e+02
zf-C2H2    3/13    770   792 ..     1    24 []    11.2      8.2
zf-C2H2    4/13    798   820 ..     1    24 []    10.0       11
zf-C2H2    5/13    829   852 ..     1    24 []     6.8       22
zf-C2H2    6/13    857   880 ..     1    24 []    15.2      1.5
zf-C2H2    7/13    892   909 ..     1    24 []     0.7       83
zf-C2H2    8/13    922   945 ..     1    24 []    20.6    0.038
zf-C2H2    9/13   1013  1036 ..     1    24 []    12.0      6.9
zf-C2H2   10/13   1043  1066 ..     1    24 []    27.5   0.0003
zf-C2H2   11/13   1073  1099 ..     1    24 []    15.1      1.6
zf-C2H2   12/13   1154  1176 ..     1    24 []     6.9       21
zf-C2H2   13/13   1183  1206 ..     1    24 []    18.5     0.16

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 13, from 617 to 642: score 10.4, E = 9.7
                   *->ykCpfdCgksFsrksnLkrHlrt...H<-*
                      y C  +Cg +F   ++L +H  +++ H   
   mKIAA0211   617    YCCL-ECGDAFALEKSLSQHYSRrsvH    642  

zf-C2H2: domain 2 of 13, from 645 to 669: score -0.8, E = 1.2e+02
                   *->ykCpfdCg..ksFsrksnLkrHlrtH<-*
                        C+  C ++  F +k +L rH r H   
   mKIAA0211   645    VLCT-LCSktLFFFNKCSLLRHARDH    669  

zf-C2H2: domain 3 of 13, from 770 to 792: score 11.2, E = 8.2
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +C+ +C+    ++ ++ +H+r+H   
   mKIAA0211   770    LTCQ-VCQMLLPNQCSFCAHQRVH    792  

zf-C2H2: domain 4 of 13, from 798 to 820: score 10.0, E = 11
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y Cp +Cg  + r++ +++H + ++   
   mKIAA0211   798    YCCP-ECGVLC-RSAYFQTHVKEnC    820  

zf-C2H2: domain 5 of 13, from 829 to 852: score 6.8, E = 22
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y+C  +Cg    + + Lk+H++ +H   
   mKIAA0211   829    YRCI-HCGVIHLTLALLKSHIQErH    852  

zf-C2H2: domain 6 of 13, from 857 to 880: score 15.2, E = 1.5
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      +kC   C  +F++ s+   H  t+H   
   mKIAA0211   857    HKCA-FCPMAFKTASSTMDHSTTqH    880  

zf-C2H2: domain 7 of 13, from 892 to 909: score 0.7, E = 83
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+  C  +F    n krH++ H   
   mKIAA0211   892    YKCS--CEMVF----NKKRHIQQH    909  

zf-C2H2: domain 8 of 13, from 922 to 945: score 20.6, E = 0.038
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      +kCp +C   F +k +L +H + +H   
   mKIAA0211   922    FKCP-ECPLLFLQKPELMQHVKNtH    945  

zf-C2H2: domain 9 of 13, from 1013 to 1036: score 12.0, E = 6.9
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                       +C+ +C++   +++++ +H++++H   
   mKIAA0211  1013    WTCQ-ECQEWVPDRESYVSHMKKsH    1036 

zf-C2H2: domain 10 of 13, from 1043 to 1066: score 27.5, E = 0.0003
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y C  +C +sF ++s+L++H+r +H   
   mKIAA0211  1043    YPCR-QCEQSFHNPSSLRKHIRNnH    1066 

zf-C2H2: domain 11 of 13, from 1073 to 1099: score 15.1, E = 1.6
                   *->ykCpfdCg...ksFsrksnLkrHlrt.H<-*
                      y+C  +C +++ sF r+s L++H+   H   
   mKIAA0211  1073    YTCG-YCTedsPSFPRPSLLESHISLmH    1099 

zf-C2H2: domain 12 of 13, from 1154 to 1176: score 6.9, E = 21
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C  +C  +  +  ++++H+  H   
   mKIAA0211  1154    FQCA-KCTFATDSELEFQSHIPQH    1176 

zf-C2H2: domain 13 of 13, from 1183 to 1206: score 18.5, E = 0.16
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                       +C   Cg ++++ s+L+rHl + H   
   mKIAA0211  1183    AQCL-LCGLCYTSTSSLNRHLFIvH    1206 

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