hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mic/mic20042/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0210  ( 821 res)   mic20042

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TBC      Domain in Tre-2, BUB2p, and Cdc16p. Probable   300.4    1.3e-85   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TBC        1/1      84   390 ..     1   310 []   300.4  1.3e-85

Alignments of top-scoring domains:
TBC: domain 1 of 1, from 84 to 390: score 300.4, E = 1.3e-85
                   *->vrkGvppslRgeVWklLlnaqpmntsnweraqkakdaesqflvvndd
                       ++ +++++R ++Wkl+l+ +p+++s+w++               ++
   mKIAA0210    84    NGQLRSSRFRSICWKLFLCVLPQDKSQWIS--------------KIK 116  

                   rlkdeYsrllnqtapkdkstdleqavssnnkdfeeqPL.....siwn.ff
                   +l+ +Ys++++++ ++++++  +q+ ++nn      PL+++++s+wn+ff
   mKIAA0210   117 ELRAWYSSIKEIHITNPRKAAGQQDLMINN------PLsqdegSLWNkFF 160  

                   qdndsldqIekDlkRTfpelsfFqfrsrdnqkevllddengpgqesLrrv
                   qd++++++Ie+D+kRTfpe++fFq++                +++ L +v
   mKIAA0210   161 QDKELRSMIEQDVKRTFPEMQFFQQE---------------NVRKILTDV 195  

                   LkaYslynpehivgYcQGmnflaapLLlvmpi..................
                   L++Y++ n++  + Y+QGm++l+ap+ ++++++++   + +++ +++++ 
   mKIAA0210   196 LFCYARENEQ--LLYKQGMHELLAPIIFTLHCdhqaflhasesaqpseem 243  

                   .......ydEedAFwcfvkLmerylpnflfk.dt................
                   ++  +++y+E+dA+++f++Lme+ +p+f ++++++++++++   + +  +
   mKIAA0210   244 ktllnpeYLEHDAYAMFSQLMETAEPWFSTFeHDgqkgketlmapipfar 293  

                   nnfytpdlsglqadqlvldslleeylPeLykHLqeqdkqskkkhvdklei
                   +++  p+   +++ ++ +d+ll++++ eLy+HL++            lei
   mKIAA0210   294 PQDLGPTVAIVTKVNQIQDHLLKKHDIELYMHLNR------------LEI 331  

                   dpslyalrWfLtlFarelPledvlRiwDvlfaellrlgseflfkialaiL
                    p++y+lrW ++lF+re+Pl+d+l +wD lfa+  +l   ++ +++ a+L
   mKIAA0210   332 APQIYGLRWVRLLFGREFPLQDLLVVWDALFAD--SLNLSLVDYVFTAML 379  

                   klnedkllkld<-*
                    + +d l+  +   
   mKIAA0210   380 LYIRDALISSN    390  

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