hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mic/mic20042/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0210  ( 821 res)   mic20042

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TBC      TBC domain                                     -40.2    0.00065   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TBC        1/1     128   389 ..     1   219 []   -40.2  0.00065

Alignments of top-scoring domains:
TBC: domain 1 of 1, from 128 to 389: score -40.2, E = 0.00065
                   *->vkeGvpsstrakVWavcsgAyqlrYAsageYerllrrgdekesqavd
                      + +  p    ++  ++  +         g       +  e  s    
   mKIAA0210   128    IHITNPRKAAGQQDLMINNPLSQD---EGSLWNKFFQDKELRSM--- 168  

                   kIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvgYcQGMNV
                    Ie+DvkRt ++  +Fq +        L  vL  Y + n   +Y QGM  
   mKIAA0210   169 -IEQDVKRTFPEMQFFQQE---NVRKILTDVLFCYARENEQLLYKQGMHE 214  

                   vaAp...........fLllykS................EeqAFyfLdrLl
                   + Ap   + + +++ fL +  S +++++ ++  +++  E +A+ ++ +L+
   mKIAA0210   215 LLAPiiftlhcdhqaFLHASESaqpseemktllnpeylEHDAYAMFSQLM 264  

                   envvPlKYyl..........................pdldGvrlDqkvLd
                   e   P   +++ ++++++++++   + +  ++++ +p+   v     + d
   mKIAA0210   265 ETAEPW--FStfehdgqkgketlmapipfarpqdlgPTVAIVTKVNQIQD 312  

                   sfveellprLYeYLlskgvdlkvvsLpwfLsLyattlPleeAlrIfDiLF
                     ++  + +LY +L  + +  +++ L w   L+    Pl   l ++D LF
   mKIAA0210   313 HLLKKHDIELYMHLNRLEIAPQIYGLRWVRLLFGREFPLQDLLVVWDALF 362  

                   adGivllfr..vaLAvLkilkeqiLda<-*
                   ad   l + + v  A L   ++ ++     
   mKIAA0210   363 ADSLNLSLVdyVFTAMLLYIRDALISS    389  

//