hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg02148/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0207  ( 541 res)   mbg02148

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SH2      Src homology 2 domains                         114.3    1.3e-29   1
RA       Ras association (RalGDS/AF-6) domain            82.6    4.7e-20   1
PH       Pleckstrin homology domain.                     48.5    8.5e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RA         1/1     114   198 ..     1   102 []    82.6  4.7e-20
PH         1/1     239   349 ..     1    82 []    48.5  8.5e-10
SH2        1/1     438   527 ..     1    87 []   114.3  1.3e-29

Alignments of top-scoring domains:
RA: domain 1 of 1, from 114 to 198: score 82.6, E = 4.7e-20
                   *->dtyvlrVyvddlsavdpgqtyktlrvskrtTardViqqllekfhltd
                         +++V+ +d       +t+k++++  ++Tard++q+l++k h+ d
   mKIAA0207   114    LRKDVKVFSED-------GTSKVVEILTDMTARDLCQLLVYKSHCVD 153  

                   edpeeYvLvevlpsggkErvLlddenPlqlqklwprdaksprqsslrFvL
                     ++++ Lve++p+ g+Er+L+d+e ++q+ +++p++        ++F++
   mKIAA0207   154 --DNSWTLVEHHPQLGLERCLEDHEIVVQVESTMPSE--------SKFLF 193  

                   rkrdd<-*
                   rk+++   
   mKIAA0207   194 RKNYA    198  

PH: domain 1 of 1, from 239 to 349: score 48.5, E = 8.5e-10
                   *->vikeGwLlkks..k.swkkryfvLfngvLlyyksk......kpkgsi
                      ++++G+L +k+ +++swkk y++L+++ L+y  + ++++++ ++   
   mKIAA0207   239    PEIQGFLQVKEvgRkSWKKLYVCLRRSGLYYSTKGtskeprHLQLLA 285  

                   pLsgc.svre.p...........cFeivt.dr......tlllqAeseeer
                   +L++ ++++  ++++  + +++++ +i+ ++ +++ ++  ll+Ae+e+ r
   mKIAA0207   286 DLEESsIFYLiAgkkqynapnehGMCIKPnKAktemkeLRLLCAEDEQIR 335  

                   eeWvealqsaiaka<-*
                   ++W++a++ + +     
   mKIAA0207   336 TCWMTAFRLLKYGM    349  

SH2: domain 1 of 1, from 438 to 527: score 114.3, E = 1.3e-29
                   *->epWYHGkisReeAEklLkneggpdGtFLvRdSesspgdyvLSvrvkg
                      ++W+HG+isRee +++ k++g  dG FL+RdS+s+p+++vL++++++
   mKIAA0207   438    QHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQ 484  

                   kvkHyrIrrtdd...gkfylggtprrkFpsL.eLvehYqknslg<-*
                   k+k+++I + +d+++  f l++ +++kF++L +Lv++Yq n+++   
   mKIAA0207   485 KIKNFQILPCEDdgqTFFTLDD-GNTKFSDLiQLVDFYQLNKGV    527  

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