hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg02148/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0207 ( 541 res) mbg02148 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SH2 SH2 domain 67.5 2.9e-16 1 RA Ras association (RalGDS/AF-6) domain 60.3 4.1e-14 1 PH PH domain 56.6 5.3e-13 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- RA 1/1 114 198 .. 1 98 [] 60.3 4.1e-14 PH 1/1 239 347 .. 1 92 [] 56.6 5.3e-13 SH2 1/1 440 521 .. 1 82 [] 67.5 2.9e-16 Alignments of top-scoring domains: RA: domain 1 of 1, from 114 to 198: score 60.3, E = 4.1e-14 *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe ++V+ edgt +k++ + ++Ta++++++l+ K ++ d + mKIAA0207 114 LRKDVKVFSEDGT---SKVVEILTDMTARDLCQLLVYKSHC--VDDN 155 dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqvrsrFlLrrre ++ LvE + ++ g er +L+d+E ++q+ ++ ++ s Fl+r++ mKIAA0207 156 SWTLVE---HHPQLGLER-CLEDHEIVVQVESTMPS----ESKFLFRKNY 197 d<-* + mKIAA0207 198 A 198 PH: domain 1 of 1, from 239 to 347: score 56.6, E = 5.3e-13 *->vikeGwLlkkg.gkkswkkRyfvLfndvLlyykdkk....kkpkgsi ++++G+L++k+ g+kswkk y++L+++ L+y + +++++ ++ mKIAA0207 239 PEIQGFLQVKEvGRKSWKKLYVCLRRSGLYYSTKGTskepRHLQLLA 285 pLsgiqvekvpdn......krkncFeirt.dr.....etlllqaeseeer +L+++++ ++ +++++ + +++++ +i+ + +++ +e ll+ae+e+ r mKIAA0207 286 DLEESSIFYLIAGkkqynaPNEHGMCIKPnKAktemkELRLLCAEDEQIR 335 keWvkaiqsair<-* + W++a++ + + mKIAA0207 336 TCWMTAFRLLKY 347 SH2: domain 1 of 1, from 440 to 521: score 67.5, E = 2.9e-16 *->WyhGkIsRkeAErlLlnpggkdGtFLvReSestpGdYtLSVrddgpq W+hG IsR+e +r+ ++ g dG FL+R+S+s+p ++L++++ mKIAA0207 440 WFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQ-- 484 gdrVkHyrIqsldng...gyyitggvk.FssLpeLvehY<-* ++k ++I ++ +++ + + +g ++Fs+L +Lv++Y mKIAA0207 485 --KIKNFQILPCEDDgqtFFTLDDGNTkFSDLIQLVDFY 521 //