hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg01039/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0204 ( 1307 res) mbg01039 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Pkinase Protein kinase domain 321.2 1.2e-92 1 Pkinase_Tyr Protein tyrosine kinase 108.6 1.2e-28 1 UVR UvrB/uvrC motif 6.6 0.59 1 Vicilin_N Vicilin N terminal region -75.5 0.82 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Pkinase 1/1 139 397 .. 1 287 [] 321.2 1.2e-92 Pkinase_Tyr 1/1 139 397 .. 1 272 [] 108.6 1.2e-28 UVR 1/1 978 1013 .. 1 36 [] 6.6 0.59 Vicilin_N 1/1 913 1017 .. 1 183 [] -75.5 0.82 Alignments of top-scoring domains: Pkinase: domain 1 of 1, from 139 to 397: score 321.2, E = 1.2e-92 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr +e+++ lG G+fG+Vyka++k t+ + A K+i+ ++e++ +d+ mKIAA0204 139 WEIIGELGDGAFGKVYKAQNKETNVLAAAKVIDTKSEEELEDYMV-- 183 rsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrlldLfdylse Ei il++++HpNIv+l+d+f+++++l++ E+c gG +++ mKIAA0204 184 --EIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGG----AVDAVML- 226 trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldengv + ++pl +e +++ +++Q+l++l+YLH+n+iiHRDLK NIL+ +g+ mKIAA0204 227 -ELERPL--TESQIQVVCKQTLEALNYLHDNKIIHRDLKAGNILFTLDGD 273 vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvll....ggngyg + K+aDFG+++k t+ ++ ++f GTp++mAPEv++ +++++++y+ mKIAA0204 274 I----KLADFGVSAKN-TrTIQrRDSFIGTPYWMAPEVVMcetsKDRPYD 318 tkvDvWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplefdsp +k+DvWSlG++l+e++ +pP + ++ + l +i+k +p l +s mKIAA0204 319 YKADVWSLGITLIEMAEIEPPHHEL---NpMRVLLKIAKSEPPTLAQPSK 365 ewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* ++ +++kd+++kcL+k+ R+t ++lqHP++ mKIAA0204 366 WS---------------SNFKDFLRKCLEKNVDARWTTSQLLQHPFV 397 Pkinase_Tyr: domain 1 of 1, from 139 to 397: score 108.6, E = 1.2e-28 *->lklgkkLGeGaFGeVykGtlkgsgegtkikVAVKtLkeigasseeie +++ +LG GaFG+Vyk+ k +t++ A K++ + + s+ee mKIAA0204 139 WEIIGELGDGAFGKVYKAQNK----ETNVLAAAKVI-D-TKSEEE-- 177 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL +ed + E+ i+ + dHpNiV+Ll + + + l+i E+++gG mKIAA0204 178 LEDYMVEIDILASC-DHPNIVKLLDAFYY-ENN----LWILIEFCAGGAV 221 ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs + + + +rpLt ++ ++ Q ++++YL++++++HRDL A N+L + mKIAA0204 222 DAVMLEL--ERPLTESQIQVVCKQTLEALNYLHDNKIIHRDLKAGNILFT 269 enlvVKIsDFGLaRdiynddyY.vrkkgggk.lPvkWmAPEslkygk... ++ +K +DFG + + ++ ++ ++ WmAPE+ + +++ mKIAA0204 270 LDGDIKLADFGVSAK-----NTrTIQRRDSFiGTPYWMAPEVVMCETskd 314 ..FtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyed.GyRLpr +++ k DVWS G++L E+ e+P ++ + +vl ++++++ L++ mKIAA0204 315 rpYDYKADVWSLGITLIEMAE-IEPP-HHELNPMRVLLKIAKSePPTLAQ 362 PenCPdelYdlMlqCWaedPedRPtFsel..verL<-* P + + d ++C +++ + R t s+l ++ + mKIAA0204 363 PSKWSSNFKDFLRKCLEKNVDARWTTSQLlqHPFV 397 UVR: domain 1 of 1, from 978 to 1013: score 6.6, E = 0.59 *->ekeikeLekeMeeAaenldFEkAAelRDeIqaLkeq<-* ++ei+ Lek+ ++ +e l+ E +lRDe +++k + mKIAA0204 978 DQEIENLEKQQKQTIERLEQEHTNRLRDEAKRIKGE 1013 Vicilin_N: domain 1 of 1, from 913 to 1017: score -75.5, E = 0.82 *->pGRrnYeDDPqqrYEqCqRRCesetrGqrEQqqCEeRCkeqykEeqq ++ + D ++ RR +e r+ r q+ E+R +q+ + q mKIAA0204 913 SKIVT-DSDSKTEELRFLRR--QELRELRLLQKEEQRAQQQLNGKLQ 956 qqRqReEDPQrrYeeCqqrCqqeETEeRhrptCqQrCerrYEke..qqqQ qq R E rr+E+e ++ mKIAA0204 957 QQ--R-EQIF----------------------------RRFEQEmlSKK- 974 QKRYEEQQREDEEKYEERmKEEDNKRDPqqRqyqeCQqRCqqQEQrPrrq Rqy q+ E ++ mKIAA0204 975 ------------------------------RQYD------QEIE--NLEK 986 QQCqReCREQY.qEqqerGeeenknPQWReeeeersEEG<-* QQ + E+ +qE + + +++ +++ E + mKIAA0204 987 QQ--KQTIERLeQE-HTNRLRDEA-----KRIKGEQEKE 1017 //