hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh00446/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0202  ( 470 res)   mbh00446

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
GTP_CDC  Cell division protein                          402.3   4.5e-117   1
MMR_HSR1 GTPase of unknown function                      -5.3       0.02   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MMR_HSR1   1/1      86   230 ..     1   140 []    -5.3     0.02
GTP_CDC    1/1      82   355 ..     1   294 []   402.3 4.5e-117

Alignments of top-scoring domains:
MMR_HSR1: domain 1 of 1, from 86 to 230: score -5.3, E = 0.02
                   *->lrvaivGrPNVGKSTLiNaLtgk......kraiVsdyPGtTrdpneg
                      + +  vG +  GK TL+N+L + + +++++    + +    + p+++
   mKIAA0202    86    FNILCVGETGIGKATLMNTLFNTtfeteeASHHEECVR---LRPQTY 129  

                   rvel..dgrqiilvDTPGiiegaskgeg.....................e
                    ++ ++ + ++++vD +G+++   k+   ++  +  + + ++  +++ ++
   mKIAA0202   130 DLQEsnVHLKLTIVDAVGFGDQINKDDSyrpivdyidaqfenylqeelkI 179  

                   lgertleaieeaDlilfVvDase.gltedytieeDleiadllydeerern
                   +   +  +  + +++l+ +  + + l+       Dl   ++l        
   mKIAA0202   180 RRSLFDYHDTRIHVCLYFITPTGhSLK-----SLDLVTMKKL-------- 216  

                   leltLqelekkgkPvilvlNKiD<-*
                            k +  +i ++ K+D   
   mKIAA0202   217 -------DSKVN--IIPIIAKAD    230  

GTP_CDC: domain 1 of 1, from 82 to 355: score 402.3, E = 4.5e-117
                   *->kGfdFTLMVVGeSGLGKtTlINTLFltdLidangvanDsreidgpae
                       Gf+F++++VGe G+GK+Tl+NTLF+t+  ++            +a 
   mKIAA0202    82    QGFSFNILCVGETGIGKATLMNTLFNTTFETE------------EAS 116  

                   tkikkTveIkeitkveiEEdGvkLnLTViDTPGFGDaiDNskcWepIveY
                    + ++ v ++  ++  + E +v+L+LT++D+ GFGD+i+  ++ +pIv+Y
   mKIAA0202   117 -HHEECVRLR-PQTYDLQESNVHLKLTIVDAVGFGDQINKDDSYRPIVDY 164  

                   IdeQheqYLrqEsrinRetki..vDnRVHcCLYFIsPtGhgLkpLDvefM
                   Id Q+e+YL++E +i+R   ++  D+R+H+CLYFI+PtGh Lk LD+ +M
   mKIAA0202   165 IDAQFENYLQEELKIRR-SLFdyHDTRIHVCLYFITPTGHSLKSLDLVTM 213  

                   KkLsekVNlIPVIAKADtLTadElqefKkrIreeierqnIkIYkFPPdee
                   KkL++kVN+IP+IAKADt  + El+ fK +I+ e+   ++ IY+F P+++
   mKIAA0202   214 KKLDSKVNIIPIIAKADTISKSELHKFKIKIMGELVSNGVQIYQF-PTDD 262  

                   edeGDEefkeqtqqLkssiPFAIVGSneeiengdGekVRGRkYPWGvVEV
                   e    +e    +  + + +PFA+VGS+ee+     + VR R+YPWGvV V
   mKIAA0202   263 EAV--AE---INAVMNAHLPFAVVGSTEEVKV-GNKLVRARQYPWGVVQV 306  

                   ENpsHCDFvkLRnlLirtHLqDLketTeeilYEnYRsekLsalglkaen<
                   EN++HCDFvkLR++Lir +++DL e T+  +YE YR+ kL+++g  + + 
   mKIAA0202   307 ENENHCDFVKLREMLIRVNMEDLREQTHSRHYELYRRCKLEEMGFQDSD  355  

                   -*
                     
   mKIAA0202     -    -    

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