hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj09054/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0199  ( 1277 res)   mfj09054

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                    96.5    3.1e-24   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/6     766   803 ..     1    46 []    20.1     0.32
WD40       2/6     954   991 ..     1    46 []     2.9  1.7e+02
WD40       3/6    1063  1103 ..     1    46 []    22.2    0.075
WD40       4/6    1106  1144 ..     1    46 []    41.7  9.9e-08
WD40       5/6    1148  1184 ..     1    46 []    19.4     0.42
WD40       6/6    1187  1224 ..     1    46 []     6.6       45

Alignments of top-scoring domains:
WD40: domain 1 of 6, from 766 to 803: score 20.1, E = 0.32
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t  +  +l+gH    ++ ++a  +dg       ll+s++  g++++W
   mKIAA0199   766    TeIVPLVLRGHLM--DIECLA--SDG------MLLVSCClAGQVCVW 802  

                   d<-*
                   d   
   mKIAA0199   803 D    803  

WD40: domain 2 of 6, from 954 to 991: score 2.9, E = 1.7e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       + +l+  +   g  +++s+    +        l+++g + g + +W
   mKIAA0199   954    GsPPLAWTPSTAG--SIWSLELQGN--------LIVVGRsSGRLEVW 990  

                   d<-*
                   d   
   mKIAA0199   991 D    991  

WD40: domain 3 of 6, from 1063 to 1103: score 22.2, E = 0.075
                   *->t.kllrtlk...gHtgespVtsvafspdggssdspnllasgs.Dgti
                      t ++ rt + + +H++  p+t+++            +l++gs+D+t+
   mKIAA0199  1063    TvTCHRTHTvpcAHQK--PITALRAAAG--------RLVTGSqDHTL 1099 

                   rlWd<-*
                   r++    
   mKIAA0199  1100 RVFR    1103 

WD40: domain 4 of 6, from 1106 to 1144: score 41.7, E = 9.9e-08
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++ +l+tlkgH+g  ++t+v ++++        +lasg++Dg i+lW
   mKIAA0199  1106    DsCCLFTLKGHSG--AITAVYIDQT-------MVLASGGqDGAICLW 1143 

                   d<-*
                   d   
   mKIAA0199  1144 D    1144 

WD40: domain 5 of 6, from 1148 to 1184: score 19.4, E = 0.42
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +++ +t+  H+g  +Vts++   +        +++s++ D  i +W
   mKIAA0199  1148    GsRVSQTFA-HRG--DVTSLTCTAS--------CVISSGlDDFISIW 1183 

                   d<-*
                   d   
   mKIAA0199  1184 D    1184 

WD40: domain 6 of 6, from 1187 to 1224: score 6.6, E = 45
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgsDgtirlWd
                      t+  l++++   g     s+ + +d       nll++g+ g++ +Wd
   mKIAA0199  1187    TgIKLYSIQQDLG--CGASLGVISD-------NLLVTGGQGCVSFWD 1224 

                   <-*
                      
   mKIAA0199     -     -    

//