hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj09054/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0199  ( 1277 res)   mfj09054

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                        90.5    3.4e-23   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/4     768   803 ..     1    38 []    20.1    0.054
WD40       2/4    1068  1103 ..     1    38 []    22.9   0.0073
WD40       3/4    1108  1144 ..     1    38 []    37.7  2.6e-07
WD40       4/4    1149  1184 ..     1    38 []    17.2     0.39

Alignments of top-scoring domains:
WD40: domain 1 of 4, from 768 to 803: score 20.1, E = 0.054
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       +  vl+gH   ++c+a +     ll+s++  g +++Wd   
   mKIAA0199   768    IVPLVLrGHLMDIECLASDGM---LLVSCCLAGQVCVWD    803  

WD40: domain 2 of 4, from 1068 to 1103: score 22.9, E = 0.0073
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                         +v  +H++p+t+++ +     +l++gS D+t++++    
   mKIAA0199  1068    RTHTVPcAHQKPITALRAAAG---RLVTGSQDHTLRVFR    1103 

WD40: domain 3 of 4, from 1108 to 1144: score 37.7, E = 2.6e-07
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      +cl +l+gH++++t+v +++    +lasg+ Dg i++Wd   
   mKIAA0199  1108    CCLFTLkGHSGAITAVYIDQT--MVLASGGQDGAICLWD    1144 

WD40: domain 4 of 4, from 1149 to 1184: score 17.2, E = 0.39
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        ++   +H + Vt++ +  +   +++s++ D  i iWd   
   mKIAA0199  1149    SRVSQTfAHRGDVTSLTCTAS---CVISSGLDDFISIWD    1184 

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