hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm05258/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0198  ( 506 res)   mpm05258

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    106.8    2.5e-27   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/6      78   102 ..     1    23 []    28.0   0.0013
ZnF_C2H2   2/6     108   130 ..     1    23 []    23.9    0.023
ZnF_C2H2   3/6     137   159 ..     1    23 []    23.5     0.03
ZnF_C2H2   4/6     166   188 ..     1    23 []    21.3     0.14
ZnF_C2H2   5/6     201   223 ..     1    23 []    23.5    0.029
ZnF_C2H2   6/6     229   252 ..     1    23 []    22.2    0.071

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 6, from 78 to 102: score 28.0, E = 0.0013
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      y Cp+  Cgk f sk  L rHm +H   
   mKIAA0198    78    YSCPQlHCGKAFASKyKLYRHMATH    102  

ZnF_C2H2: domain 2 of 6, from 108 to 130: score 23.9, E = 0.023
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C + C+k f++k++L++H+++H   
   mKIAA0198   108    HQCMY-CDKMFHRKdHLRNHLQTH    130  

ZnF_C2H2: domain 3 of 6, from 137 to 159: score 23.5, E = 0.03
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgk +++k  ++rH+ +H   
   mKIAA0198   137    LHCSE-CGKNYNTKlGYRRHLAMH    159  

ZnF_C2H2: domain 4 of 6, from 166 to 188: score 21.3, E = 0.14
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ C ++f s +aL +H++ H   
   mKIAA0198   166    LSCKV-CLQTFESTqALLEHLKAH    188  

ZnF_C2H2: domain 5 of 6, from 201 to 223: score 23.5, E = 0.029
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ C+++f ++++ +rH+ vH   
   mKIAA0198   201    HPCDH-CDRRFYTRkDVRRHLVVH    223  

ZnF_C2H2: domain 6 of 6, from 229 to 252: score 22.2, E = 0.071
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      + C++ C ++f +k++L+rH++++H   
   mKIAA0198   229    FLCQY-CAQRFGRKdHLTRHVKkSH    252  

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