hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm05258/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0198  ( 506 res)   mpm05258

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         105.2    1.2e-27   6
FYVE     FYVE zinc finger                               -18.0       0.59   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/6      78   102 ..     1    24 []    29.7  6.6e-05
zf-C2H2    2/6     108   130 ..     1    24 []    25.5   0.0012
zf-C2H2    3/6     137   159 ..     1    24 []    19.9    0.062
zf-C2H2    4/6     166   188 ..     1    24 []    19.2    0.095
FYVE       1/1     132   212 ..     1    77 []   -18.0     0.59
zf-C2H2    5/6     201   223 ..     1    24 []    22.7   0.0084
zf-C2H2    6/6     229   252 ..     1    24 []    23.7   0.0043

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 6, from 78 to 102: score 29.7, E = 6.6e-05
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      y+Cp  +Cgk+F +k+ L rH+ tH   
   mKIAA0198    78    YSCPQlHCGKAFASKYKLYRHMATH    102  

zf-C2H2: domain 2 of 6, from 108 to 130: score 25.5, E = 0.0012
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C  +C+k+F rk++L++Hl+tH   
   mKIAA0198   108    HQCM-YCDKMFHRKDHLRNHLQTH    130  

zf-C2H2: domain 3 of 6, from 137 to 159: score 19.9, E = 0.062
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                        C+ +Cgk +++k  ++rHl +H   
   mKIAA0198   137    LHCS-ECGKNYNTKLGYRRHLAMH    159  

zf-C2H2: domain 4 of 6, from 166 to 188: score 19.2, E = 0.095
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +C+ +C ++F +   L  Hl+ H   
   mKIAA0198   166    LSCK-VCLQTFESTQALLEHLKAH    188  

FYVE: domain 1 of 1, from 132 to 212: score -18.0, E = 0.59
                   *->phWvpDeevsnCmrCgkpFtk.ltkRrH...HCRaCGrifCgsCssk
                          p +e+ +C++Cgk+ +++l  RrH   H  + G++ C+ C++ 
   mKIAA0198   132    ----PNKEALHCSECGKNYNTkLGYRRHlamHAASSGDLSCKVCLQT 174  

                   tvllpylgiaall.k..n.dviekpvRVCdsCydrlnk<-*
                   + + + l ++ + + ++  ++ + +   Cd+C  r +    
   mKIAA0198   175 FESTQALLEHLKAhSrrVaGGAKEKKHPCDHCDRRFYT    212  

zf-C2H2: domain 5 of 6, from 201 to 223: score 22.7, E = 0.0084
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+ +C+++F ++++ +rHl +H   
   mKIAA0198   201    HPCD-HCDRRFYTRKDVRRHLVVH    223  

zf-C2H2: domain 6 of 6, from 229 to 252: score 23.7, E = 0.0043
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      + C+ +C ++F rk++L+rH +++H   
   mKIAA0198   229    FLCQ-YCAQRFGRKDHLTRHVKKsH    252  

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