hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg19457/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0193 ( 439 res) mbg19457 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Peptidase_C69 Peptidase family C69 490.3 1.5e-143 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Peptidase_C69 1/1 31 384 .. 1 449 [] 490.3 1.5e-143 Alignments of top-scoring domains: Peptidase_C69: domain 1 of 1, from 31 to 384: score 490.3, E = 1.5e-143 *->aCTtiLVGKkASaDGSTiiARNEDSyglgggainpkkfivvpakdhe + +++++++++ +DG +++++N+ ++++++++++++pa+dh+ mKIAA0193 31 PSYSFVALPPRAKDGLVVFGKNSA-----RPRDEVQEVVYFPAVDHD 72 dqprhYkSvtngftipLPenplrYTsvpnvpetddgkdGiweeAGiNean +++ +++Y+s+++vp+t++ +i+++A++++a+ mKIAA0193 73 ---------------AESKVECTYISIDQVPRTHAI--VISRPAWLWGAE 105 VgMSATETittNervLgaDPyvvadeegGlgEedlvtlvLPyikSAREGV +g+++++++++Ne++++++P e+++l+++dlv+l+L++ ++A+E++ mKIAA0193 106 MGANEHGVCIANEAINAREPAA---ETEALLGMDLVRLGLERGTTAKEAL 152 erLGdLlEeYGtyGNclEdaes..SEgNGvafsDkdEIWyLETiGGHhWv ++++ Ll+e+G++GN++Eda+s +S+++ ++++D+dE+W+LET+ G++W+ mKIAA0193 153 DIIVSLLDEHGQGGNYYEDAHSchSFQSAYLLVDRDEAWVLETV-GKYWA 201 AvRiPDDaYavapNQlrIdtfDfNDkGQdnymaSpDLrefaeknhLnptk A+Ri+++++++ +N+l++ t + + ++p+Lr++a+ +++++++ mKIAA0193 202 AERITEGVRCI-CNHLSLAT--------KLDEEHPELRTYAQSQGWWTGD 242 edgeFNfrkaFGLtqdekDrhYNtPRvWygQrlLndhedydPeiktqtPe + eFNf+++F+ + ++ ++++gQ++L+ k mKIAA0193 243 D--EFNFAQVFS-------PADDRLDCCAGQDSLE---------K----- 269 sqdlPfirkpnrKIsvEDVkfvLrsHYegTnlpyDPyGsfgqGtaeekkr +++ I+v+++ ++Lr++ +g+++ mKIAA0193 270 ---------QEESITVQTMINILRDKASGVCI------------------ 292 fRkfyeypIginRtqeshvlQiRpnvPaeiagvqWlAfGspsfsvyvPFy ++ ++t++s+v+++++n++ + ++++++++++ps+s+++PF+ mKIAA0193 293 -------DSESFLTTASIVSVLPQNRSSP-CIHYFTGTPDPSRSIFKPFI 334 anvndtpaayrRVdtttkvdtdwnsaYWlfrtiavLvdshydefahdvqd ++ ++ + + ++++++d+d +a++ +r++++++++h ++ ah++++ mKIAA0193 335 FVDDVKLVPKA--QSPCFGDDD--PAKKEPRFQEKPDRRHELYKAHEWAR 380 yqke<-* +++e mKIAA0193 381 AVIE 384 //