hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp19358/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0191  ( 1556 res)   mbp19358

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2HC zinc finger C2HC, DNA-binding                   62.1    7.2e-14   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2HC   1/3     843   859 ..     1    17 []    22.9    0.013
ZnF_C2HC   2/3    1223  1239 ..     1    17 []    24.7   0.0065
ZnF_C2HC   3/3    1271  1287 ..     1    17 []    28.7  0.00078

Alignments of top-scoring domains:
ZnF_C2HC: domain 1 of 3, from 843 to 859: score 22.9, E = 0.013
                   *->kCynCGkeGHiardCpk<-*
                      +C  C+k GH ++dCp+   
   mKIAA0191   843    VCSICKKDGHSKNDCPE    859  

ZnF_C2HC: domain 2 of 3, from 1223 to 1239: score 24.7, E = 0.0065
                   *->kCynCGkeGHiardCpk<-*
                       C+ CGk GH+++dCpk   
   mKIAA0191  1223    CCRVCGKIGHYMKDCPK    1239 

ZnF_C2HC: domain 3 of 3, from 1271 to 1287: score 28.7, E = 0.00078
                   *->kCynCGkeGHiardCpk<-*
                      +C+ CG  GH++r+Cp+   
   mKIAA0191  1271    RCFICGDAGHVRRECPE    1287 

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