hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp19358/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0191  ( 1556 res)   mbp19358

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PAP_assoc    PAP/25A associated domain                  158.7      1e-43   2
zf-CCHC      Zinc knuckle                                68.6    1.3e-16   3
NTP_transf_2 Nucleotidyltransferase domain               57.4    3.1e-13   2

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
NTP_transf_2   1/2     308   403 ..     1   122 []    12.8     0.35
PAP_assoc      1/2     560   613 ..     1    69 []    72.5  9.1e-18
zf-CCHC        1/3     842   859 ..     1    18 []    23.3   0.0017
NTP_transf_2   2/2     901   994 ..     1   122 []    44.9  1.8e-09
PAP_assoc      2/2    1113  1166 ..     1    69 []    87.5  2.7e-22
zf-CCHC        2/3    1222  1239 ..     1    18 []    27.5  0.00031
zf-CCHC        3/3    1270  1287 ..     1    18 []    30.5  3.9e-05

Alignments of top-scoring domains:
NTP_transf_2: domain 1 of 2, from 308 to 403: score 12.8, E = 0.35
                   *->reeilskikeilkelygavaevylfGSyarGtylpgdSDIDllvvsp
                      r +i+++  +++    +  +++ l+GS +++ +l+  SD+ + + +p
   mKIAA0191   308    RQDIVEEMSKVIMTFLP-ECSLRLYGSSLTKFALKS-SDVNIDIKFP 352  

                   dpvde.ef.alffslarlgkrikervksleelaeiekeleellglevDlv
                   ++ + +++  +                 l +l++ +++++     e D++
   mKIAA0191   353 PKMNHpDLlIQV----------------LGILKKSALYIDV----ESDFH 382  

                   treklerilektaplvrreileervll<-*
                    + +  +      +  r+++l  rv     
   mKIAA0191   383 AKVPVVV------CKDRKSALLCRVSA    403  

PAP_assoc: domain 1 of 2, from 560 to 613: score 72.5, E = 9.1e-18
                   *->sLGvLLigFFeyYgrreFdyedfvIsirtGqsgsllpKeekgwdkkn
                      +LG+L+++++++Y++  F  e++vI++r   + ++l++e+k+w+k++
   mKIAA0191   560    PLGQLWLELLKFYTL-DFALEEYVICVR---IQDILTRENKNWPKRR 602  

                   dsklnirqpspLcIeDPfdtsn<-*
                              ++IeDPf  ++   
   mKIAA0191   603 -----------IAIEDPFSVKR    613  

zf-CCHC: domain 1 of 3, from 842 to 859: score 23.3, E = 0.0017
                   *->rkCynCGkpGHiardCpe<-*
                      ++C  C+k GH ++dCpe   
   mKIAA0191   842    IVCSICKKDGHSKNDCPE    859  

NTP_transf_2: domain 2 of 2, from 901 to 994: score 44.9, E = 1.8e-09
                   *->reeilskikeilkelygavaevylfGSyarGtylpgdSDIDllvvsp
                      re+il  ++++++++y+++a++ lfGS  +G   ++ SD+D++ +++
   mKIAA0191   901    REQILIGLEKFIQKEYDEKARLCLFGSSKNGFGFRD-SDLDICMTLE 946  

                   dpvdeefalffslarlgkrikervksleelaeiekeleellglevDlvtr
                   ++++                    +++++ +ei++ l ++l +++ l+ +
   mKIAA0191   947 GHEN--------------------AEKLNCKEIIENLAKILKRHPGLRNI 976  

                   eklerilektaplvrreileervll<-*
                    ++           + ++++e+++    
   mKIAA0191   977 LPIT-------TAKVPIVKFEHRRS    994  

PAP_assoc: domain 2 of 2, from 1113 to 1166: score 87.5, E = 2.7e-22
                   *->sLGvLLigFFeyYgrreFdyedfvIsirtGqsgsllpKeekgwdkkn
                      sLG+L++g++++Y++ eFd++++vIsir   +++ll+  ek+w+ k 
   mKIAA0191  1113    SLGELWLGLLRFYTE-EFDFKEYVISIR---QKKLLTTFEKQWTSKC 1155 

                   dsklnirqpspLcIeDPfdtsn<-*
                              ++IeDPfd+++   
   mKIAA0191  1156 -----------IAIEDPFDLNH    1166 

zf-CCHC: domain 2 of 3, from 1222 to 1239: score 27.5, E = 0.00031
                   *->rkCynCGkpGHiardCpe<-*
                      r C+ CGk GH+++dCp+   
   mKIAA0191  1222    RCCRVCGKIGHYMKDCPK    1239 

zf-CCHC: domain 3 of 3, from 1270 to 1287: score 30.5, E = 3.9e-05
                   *->rkCynCGkpGHiardCpe<-*
                       +C+ CG  GH++r+Cpe   
   mKIAA0191  1270    LRCFICGDAGHVRRECPE    1287 

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