hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph02329/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0190  ( 818 res)   mph02329

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
UCH      Ubiquitin carboxyl-terminal hydrolase          275.1    9.2e-79   1
PAM2     Ataxin-2 C-terminal region                      25.2     0.0016   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PAM2       1/1     103   120 ..     1    18 []    25.2   0.0016
UCH        1/1     432   812 ..     1   273 []   275.1  9.2e-79

Alignments of top-scoring domains:
PAM2: domain 1 of 1, from 103 to 120: score 25.2, E = 0.0016
                   *->kkkskLNPnAkEFVPssk<-*
                      +++s+LNP+A+EF+ +++   
   mKIAA0190   103    SISSTLNPQAPEFILGCT    120  

UCH: domain 1 of 1, from 432 to 812: score 275.1, E = 9.2e-79
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->pgptGLvNlGNTCYmNSvLQcLfhipplrdyllsdsyeseinesnpl
                       +p+GL+N GN+CY+N++LQ+L+++pp+ + ++ ++ +s +   +++
   mKIAA0190   432    LQPRGLINKGNWCYINATLQALVACPPMYHLMKFIPLYSKV---QRP 475  

                RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxx               xx
                   gskgsllcaladLfnalqsg.yksvvpsplkfl...............qf
                   + ++ +  ++ +L+n++++++ +++++  l +   ++ +++   +++ ++
   mKIAA0190   476 CTSTPMIDSFVRLMNEFTNMpVPPKPRQALGDKivrdirpgaafeptyIY 525  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx x  
                   kttlgkineefsgymQqDAhEFllfLLdgLhedlnrvnkkpytepe.s..
                   +++   ++++ ++++Q+DA+E+l f+L+gLhe++ +++k    ++e+++ 
   mKIAA0190   526 RLLTVIKSSLSEKGRQEDAEEYLGFILNGLHEEMLSLKKLLSPTHEkHsv 575  

                RF                    xxxxx xxx xxxxxxxxxxxxxxxxxxxxx
                   ...................dkrpd.kaa.eawknhslrneslitdlFqGq
                   +++++++  ++++ ++++++++++ ++ + ++k +++r+ ++++++ +G+
   mKIAA0190   576 sngprsdliedeeledtgkGSEDEwEQVgPKNKTSITRQADFVQTPITGI 625  

                RF xxx                                               
                   les...............................................
                   +  + ++   +++++++ + +   + + + ++++ ++ ++  ++   +++
   mKIAA0190   626 FGGhirsvvyqqsskesatlqlfftlqldiqsdkirtvqdaleslvares 675  

                RF                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   ................rlkisrLPpiLiihLKRFkydgetgmnkKindkV
                    ++ +++++++ + ++r+++ +LPp+L++hLKRF y+ + g ++K+ +++
   mKIAA0190   676 vqgyttktkqevevsrRVTLEKLPPVLVLHLKRFVYEKT-GGCQKLVKNI 724  

                RF xxxxxxxxxxxxxxx        xxxxxxxxxxxxxxxxxxxxxxxxxxx
                   efPleLdlssyctae........pplkYeLyaVvvHsGsslsgGHYiayi
                   ++P  L +s+++++++ ++++ +++++Y+L+aVv+H+G+s++gGHY++++
   mKIAA0190   725 DYPVDLEISRELLSPgiknknfkCQRTYRLFAVVYHHGNSATGGHYTTDV 774  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxx  xxxxxxxxxx   
                   kkkkknnkWykfDDekVsevseeevle..rsssAYiLFY<-*
                      ++ n+W+++DD++V+++++++v +++  ++AY+L+Y   
   mKIAA0190   775 F-QIGLNGWLRIDDQTVKVINQYQVVKppADRTAYLLYY    812  

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