hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msj/msj09108/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0189  ( 284 res)   msj09108

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
START    in StAR and phosphatidylcholine transfer pro   245.7    3.9e-69   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
START      1/1      79   281 ..     1   248 []   245.7  3.9e-69

Alignments of top-scoring domains:
START: domain 1 of 1, from 79 to 281: score 245.7, E = 3.9e-69
                   *->evaeeaanellklaassekgWvlspetgeiengdevlsiledgqnpk
                       ++ee+ +ell++aa+++kgW  +p  g++++++ +++ +       
   mKIAA0189    79    LYMEESVQELLRDAAERFKGWTNVP--GPQHTELACRKAP------- 116  

                   qglkvsgealravgvvpmvcaedlvaellddgey.rkeWdknfagivska
                        +g++lr++++  +v+a   +a +l++ +++r++Wd+++     +a
   mKIAA0189   117 -----DGHPLRMWKASTEVAA--PPAVVLHRVLReRALWDEDLL----RA 155  

                   evvevissgtGgnrngviyhyvaksvapgpvsPtRDfvfvRywreddeHR
                   +v+e++++g       ++yhyv++s+a  p+++ RDfv++R+wr d    
   mKIAA0189   156 QVLEALMPG------VELYHYVTDSMA--PHPC-RDFVVLRMWRSD---- 192  

                   alvdgsyvivsvSvthetspptGpssgvvRaellpsgllieplgngpekd
                    l++g++++vs+S+++e+++p+    ++vRa +l s++l+ep+g g+   
   mKIAA0189   193 -LPRGGCLLVSQSLDPEQPVPE----SGVRALMLTSQYLMEPCGLGR--- 234  

                   dvkskvtwvsqaDlkGwlPvvhwllrsliksglaefaktRDsvatlqksc
                      s++t++++aDl+G++P  +w+++++++ +++e+ak+RDs+ tlq+ +
   mKIAA0189   235 ---SRLTHICRADLRGRSP--DWYNKVFGHLCAMEVAKIRDSFPTLQAAG 279  

                   ek<-*
                    +   
   mKIAA0189   280 PE    281  

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