hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msj/msj09108/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0189  ( 284 res)   msj09108

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
START    START domain                                   228.7    8.1e-65   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
START      1/1      79   281 ..     1   251 []   228.7  8.1e-65

Alignments of top-scoring domains:
START: domain 1 of 1, from 79 to 281: score 228.7, E = 8.1e-65
                   *->elaeeaaqellkmakssepgWvlssetgreeengdeylqkfedgqvt
                       ++ee  qell++a+++++gW  ++   +++++++++++ +      
   mKIAA0189    79    LYMEESVQELLRDAAERFKGWTNVP---GPQHTELACRKAP------ 116  

                   kppglkdegeasRavgvVpavlaellveellddney.rkeWdedfaciVS
                           g+++R++ +  +v+a   ++ +l++ +++r++Wded+     
   mKIAA0189   117 -------DGHPLRMWKASTEVAA--PPAVVLHRVLReRALWDEDLL---- 153  

                   saetvevissgeGGnrngalqlyvaklqapgplsPtRDfvfvRywrqdDd
                   +a+++e++++g       +l++yv+ ++a  p+++ RDfv++R+wr d  
   mKIAA0189   154 RAQVLEALMPG------VELYHYVTDSMA--PHPC-RDFVVLRMWRSD-- 192  

                   HRFledgsyavvdvSvdseqpppeGpssgvvRaerlpSgcliqplgngpe
                      l++g++++v++S+d+eqp+pe    + vRa +l S++l++p+g g  
   mKIAA0189   193 ---LPRGGCLLVSQSLDPEQPVPE----SGVRALMLTSQYLMEPCGLGR- 234  

                   krlsrdVkskvtwvehaDlkgwlPfvhwvlrslvksgmafgakr..wvat
                           s++t++++aDl+g++P  +w+++++++ +++++ak+++++ t
   mKIAA0189   235 --------SRLTHICRADLRGRSP--DWYNKVFGHLCAMEVAKIrdSFPT 274  

                   lqeqcek<-*
                   lq  +     
   mKIAA0189   275 LQAAGPE    281  

//