hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mtj/mtj00866/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0188  ( 684 res)   mtj00866

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LNS2     LNS2 (Lipin/Ned1/Smp2)                         362.6   4.2e-105   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LNS2       1/1     468   624 ..     1   159 []   362.6 4.2e-105

Alignments of top-scoring domains:
LNS2: domain 1 of 1, from 468 to 624: score 362.6, E = 4.2e-105
                   *->vViSDIDGTITkSDvLGHvlpiiGkDPWthaGVadLyrkiqenGYkI
                      v+iSDIDGTIT+SD+LGH+lp +GkD Wth+G+a+Ly+k+++nGYk+
   mKIAA0188   468    VIISDIDGTITRSDTLGHILPTLGKD-WTHQGIAKLYHKVSQNGYKF 513  

                   iYLTaRaiGQadrTrsYLsqvkQdGknLPdGpViLSPdrlfaALkREvIe
                   +Y++aRaiG+ad+Tr+YL++v+++G+ LP+Gp++LSP++lf+AL+REvIe
   mKIAA0188   514 LYCSARAIGMADMTRGYLHWVNERGTVLPQGPLLLSPSSLFSALHREVIE 563  

                   kkPeeFKiacLrdIrnlFppdngnpFyAGFGNritDvisYraVgvppsrI
                   kkPe+FK++cL+dI+nlF+p n+ pFyA+FGNr+ Dv+sY++Vg++ +rI
   mKIAA0188   564 KKPEKFKVQCLTDIKNLFFP-NTEPFYAAFGNRPADVYSYKQVGLSLNRI 612  

                   FtInpkgevhqe<-*
                   Ft+npkge+ qe   
   mKIAA0188   613 FTVNPKGELVQE    624  

//