hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpm/mpm09170/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0187 ( 1287 res) mpm09170 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- DUF663 Protein of unknown function (DUF663) 418.5 6.2e-122 1 AARP2CN AARP2CN (NUC121) domain 184.4 1.8e-51 1 MMR_HSR1 GTPase of unknown function 6.9 0.0016 1 MobB Molybdopterin guanine dinucleotide synthesis -40.7 0.66 1 GTP_EFTU Elongation factor Tu GTP binding domain -80.5 0.41 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- MMR_HSR1 1/1 86 190 .. 1 140 [] 6.9 0.0016 MobB 1/1 85 200 .. 1 154 [] -40.7 0.66 AARP2CN 1/1 234 320 .. 1 88 [] 184.4 1.8e-51 GTP_EFTU 1/1 83 901 .. 1 299 [] -80.5 0.41 DUF663 1/1 818 1111 .. 1 326 [] 418.5 6.2e-122 Alignments of top-scoring domains: MMR_HSR1: domain 1 of 1, from 86 to 190: score 6.9, E = 0.0016 *->lrvaivGrPNVGKSTLiNaLtgk...........kraiVsdyPGtTr + v++ G P VGKSTLi L++ ++++ ++ ++ + iVs + mKIAA0187 86 IVVVVMGPPKVGKSTLIRCLIRNftrqklseirgPVTIVSGKK---- 128 dpnegrveldgrqiilvDTPGiiegaskgegelgertleaieeaDlilfV + + ++e + + +++D++ + aDl+l + mKIAA0187 129 -RRLTIIECGCDINVMIDLA---------------------KVADLVLML 156 vDasegltedytieeDleiadllydeerernleltLqelekkgkPvilvl +Das g+ +e ++l + + ++ k + vl mKIAA0187 157 IDASFGFE-------------------METFEFLNICQVHGFPK-IMGVL 186 NKiD<-* + D mKIAA0187 187 THLD 190 MobB: domain 1 of 1, from 85 to 200: score -40.7, E = 0.66 *->kIvqiV.GykdSGKTTLIEklirkLkerGyRVAviKHthhGmeddiD +Iv +V G+ ++GK TLI lir + + mKIAA0187 85 PIVVVVmGPPKVGKSTLIRCLIRNFTRQ------------------- 112 keGKDTwRhrkaGadvvivagderealftetrvfeemdlelllivlddfs ++++ + v+iv+g++r+ ++ e + ++ i+l+++ mKIAA0187 113 -------KLSEIRGPVTIVSGKKRRLTIIECG-----CDINVMIDLAKVA 150 diDiiivE...GFKkaevrkkypkIvvskkgeiskkvideidglivdilt d+++ ++ + GF + +++ + + k+ + lt mKIAA0187 151 DLVLMLIDasfGFEMET----FEFLNICQVHGFPKIMGV---------LT 187 evd..eilkavvl<-* ++d+ +++k +++ mKIAA0187 188 HLDsfKHNKQLKK 200 AARP2CN: domain 1 of 1, from 234 to 320: score 184.4, E = 1.8e-51 *->EilNLlRfisvmKpRpltWRdsRpYlLaDrvedvtspeeieespkvg Ei+NL+Rfi+vmK+RpltW++s+pY+LaDr+ed+t+pe+i+++ k++ mKIAA0187 234 EIHNLGRFITVMKFRPLTWQTSHPYILADRMEDLTNPEAIRTNVKCD 280 rlvavyKGyVRGtgLnvnrlVHIpGvGDFqiskiealpDPc<-* r+v++y Gy+RG+ L++n+++H+pGvGDF+ s++++lpDPc mKIAA0187 281 RKVSLY-GYLRGAYLKNNSQIHMPGVGDFVASDVSFLPDPC 320 GTP_EFTU: domain 1 of 1, from 83 to 901: score -80.5, E = 0.41 *->krhrNigiiGHVDHGKTTLtdrLlyytgaisertleklegeakegge +++ ++++G GK+TL+ +L+ ++ ++ mKIAA0187 83 PPPIVVVVMGPPKVGKSTLIRCLIRNFTR--------------QK-- 113 rkgsfklaaviDkmeeErERG.ITIksahvsfewkdededletkakegkk + RG++TI mKIAA0187 114 ---------------LSEIRGpVTIV------S----------------- 125 rgnelTekrhiniI....DTPGHvDFtkevirGlaqaDGAiLVVdAveGv ++kr+++iI+ + D ++ +i +++aD +++++dA G mKIAA0187 126 -----GKKRRLTIIecgcD-------INVMIDLAKVADLVLMLIDASFGF 163 mpGfkGQTrehlrlArqlgvppiilvVaiNKiDrvgaelklppvpeelye + T e l+++ g p+i v ++ D + +l ++ ++ mKIAA0187 164 EM----ETFEFLNICQVHGFPKIMGV--LTHLDSFKHNKQL----KKTKK 203 elekevrellkpIgedfgvidli........................... +l++ + + ++ + ++ +++ ++++ ++ mKIAA0187 204 RLKHR---------------FWTevypgaklfylsgmvhgeyqnqeihnl 238 .................................................. ++ + + ++ + +++++ ++ ++ ++++ +++ + +++ + + mKIAA0187 239 grfitvmkfrpltwqtshpyiladrmedltnpeairtnvkcdrkvslygy 288 .................................................. ++ +++++ + ++ ++ ++ + +++ +++++++ +++++ mKIAA0187 289 lrgaylknnsqihmpgvgdfvasdvsflpdpcalpeqqkkrclnekeklv 338 .................................................. + ++ ++ +++ + +++++ + ++++++++ ++ +++ + mKIAA0187 339 yaplsgvggvlydkdavyvdlggshgfqaaeetgpthelvqslisthasi 388 .................................................. + + +++ + +++++ ++++ ++++ ++++++ + ++++ +++ mKIAA0187 389 dakmassrvtlfsdskplgsedidnqglwmpkeekqvdvetgrvrrkaif 438 .................................................. +++++++++++++++++ ++ ++ ++++++++ ++ ++++ ++++++ mKIAA0187 439 gdtedesgdeesedeedmseadgmepgssddeaeeaeeegaesssgnymm 488 .................................................. ++++++++ ++++++++ +++ +++++ +++++++++ ++ ++++ ++ mKIAA0187 489 grgrkrpkleeqeedseadspafadsdddlerssggeeeaeeadessadg 538 .................................................. ++++++ ++ ++ ++ ++++++ ++ +++ + +++++ ++ +++++ mKIAA0187 539 astgerdagecgsvgeaseespsaahqwrphadaqkpspvrkaalttsds 588 .................................................. ++ + ++ ++++++++++ + +++++++++ +++ ++++++++++ ++ mKIAA0187 589 ghctaeeafpsedesedselsaeeedsdhrevrgklahpqrdsgqkpase 638 .................................................. + +++++ ++ +++++ +++++++ ++++ + +++ +++ + ++ mKIAA0187 639 slvdetsdiesllkeeeeykednsssvetsgalkwkedlsrkaaeaflrq 688 .................................................. ++ ++ ++ ++ +++++++++++ ++ ++ + ++++++ +++ ++ mKIAA0187 689 qqaapnlrkliygtvtednededgdpaeelgglfhvsqpdrgckhkadsl 738 .................................................. + ++ + + +++ + ++ ++ ++ +++ +++++ + ++++ ++ mKIAA0187 739 dcsrfpveaphdwdleevmnsirdcfvtgkweddkdaakilaeeeelygd 788 ................................................la ++ ++++ +++++++++++++ ++++ +++++++++++ ++++ +++ mKIAA0187 789 fedletgdvhkgkpgpdtqsedieeeevkeetdpseeesarkkhldkkRK 838 e.vae.ddelmeyylegeeipiipiSalggdnidelsiknkLkkd.dlsl +++ ++ + + +++++ ++ + +n +e +d++ + mKIAA0187 839 LkELFdAEYDEGESTYFDDLKGEMQ-RQAQLNQAEF-------EDqEDET 880 vPwykgvSalknkgrdrgaiptLLealddylPsPe<-* y+g + + + ++ +++ mKIAA0187 881 RVQYEG-------------FRPGMYVRIE-IENIP 901 DUF663: domain 1 of 1, from 818 to 1111: score 418.5, E = 6.2e-122 *->DEvelppdvparer.faKYrGLkSfrtSpWDpnElkDpnlPndyari +E + +++++ar ++ K+r+Lk ++++++D+ E + mKIAA0187 818 EETDPSEEESARKKhLDKKRKLKELFDAEYDEGE----------STY 854 fqfqNykntKkrilnekyiFREtekldveeekriegvkpGsyVrleiknV f + + + +++ ln++ E+e e + + eg++pG yVr+ei+n+ mKIAA0187 855 FDDLKGEMQRQAQLNQA----EFEDQEDETRVQYEGFRPGMYVRIEIENI 900 PkelaenfnsvnpkqmpiFivfgLLphEeKmsvvnfkikkhrwykkplkS P e+++nf++ + pi i++gL E +++v+++ikkhrwykk+lkS mKIAA0187 901 PCEFVQNFDP---HY-PI-ILGGLGNSEGTVGYVQMRIKKHRWYKKILKS 945 kepLiiqvGfRRFqanPiySqPgsntsndkhKyeRYlpphktcvATfYGP +p+i++vG+RRFq++P+y + ++ n ++++++Y+p h++c ATf+GP mKIAA0187 946 RDPIIFSVGWRRFQTIPLYYI---EDHNGRQRLLKYTPQHMHCGATFWGP 992 itfpnspvlafkkvkssdsEnfrqngfrlaAtGsilevdpnriIlKklvL it++++++la++ v+ + fr+aAtG +l+ d++++I+Kkl+L mKIAA0187 993 ITPQGTGFLAIQSVSGVMP------EFRIAATGVVLDLDKSIKIVKKLKL 1036 tGhPyKIfKktafvRyMFfnreDVewFkCCvqpvplfTksGrrGhIKeal tG+P+KIfK+t f++ MF+++++V++F+ ++ ++T+sG+rG+IK+al mKIAA0187 1037 TGFPFKIFKNTSFIKGMFNSALEVAKFE----GAVIRTVSGIRGQIKKAL 1082 sgthFGyfKAtFdgkinmqDiVimsLYkRV<-* +++ G+f+A+F++k++m+DiV+m+++++V mKIAA0187 1083 RSPE-GAFRASFEDKLLMSDIVFMRTWYPV 1111 //