hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpk/mpk00905/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0186  ( 168 res)   mpk00905

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Psf1     Partner of SLD five, PSF1                      367.9     1e-106   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Psf1       1/1       1   166 [.     1   204 []   367.9   1e-106

Alignments of top-scoring domains:
Psf1: domain 1 of 1, from 1 to 166: score 367.9, E = 1e-106
                   *->lvlekalelvlelkrnpdvnLPaYnedliRqvLkevseLykknealv
                                                  +RqvL+e+++Ly++n+++v
   mKIAA0186     1    ----------------------------LRQVLEEMKALYEQNQSDV 19   

                   ekakaGlldDkvaklqyrlaaLcmErnrRCllAYlreRkdrirSlrWeyg
                   ++ak+ ++ D+++++++r++aL+  rnrRC++AYl++R++rir+lrWeyg
   mKIAA0186    20 NEAKSAGRGDLIPTIKFRHCALL--RNRRCTIAYLYDRLLRIRALRWEYG 67   

                   GvDLpsSirfsqqDTNNLsdeEieyfneYkdlLadykssLGGdLegidLs
                   +v Lp+S+rf+      +s+eE e+fn Yk++La+y++sLGGd eg+d++
   mKIAA0186    68 SV-LPNSLRFH------MSAEETEWFNHYKKSLATYMRSLGGD-EGLDIT 109  

                   ldlvPPkslFidVRvLkDyGEfetedGtsvnLkKdSqhflprsdcErLIr
                   +d +PPksl+i+VR+LkDyGEfe++dGtsv+LkK+Sqhflpr++cE+LIr
   mKIAA0186   110 QDVKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRWKCEQLIR 159  

                   QGvLeki<-*
                   QGvLe++   
   mKIAA0186   160 QGVLEHV    166  

//