hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpf/mpf00482/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0185 ( 1866 res) mpf00482 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- S1 Ribosomal protein S1-like RNA-binding domain 563.1 1.1e-164 13 HAT HAT (Half-A-TPR) repeats 65.4 7.2e-15 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- S1 1/13 87 177 .. 1 72 [] 40.8 1.8e-07 S1 2/13 191 264 .. 1 72 [] 46.2 4.2e-09 S1 3/13 285 352 .. 1 72 [] 33.7 2.6e-05 S1 4/13 369 442 .. 1 72 [] 41.1 1.5e-07 S1 5/13 457 528 .. 1 72 [] 82.1 6.6e-20 S1 6/13 546 617 .. 1 72 [] 73.9 2e-17 S1 7/13 640 713 .. 1 72 [] 22.8 0.049 S1 8/13 733 804 .. 1 72 [] 76.4 3.5e-18 S1 9/13 850 917 .. 1 72 [] 7.9 11 S1 10/13 1049 1124 .. 1 72 [] 40.5 2.3e-07 S1 11/13 1162 1237 .. 1 72 [] 28.3 0.0011 S1 12/13 1243 1313 .. 1 72 [] 35.5 7.2e-06 S1 13/13 1337 1411 .. 1 72 [] 36.9 2.8e-06 HAT 1/7 1595 1626 .. 1 34 [] 0.4 1.1e+03 HAT 2/7 1628 1665 .. 1 34 [] 9.2 71 HAT 3/7 1667 1698 .. 1 34 [] 2.4 6e+02 HAT 4/7 1700 1732 .. 1 34 [] 19.2 0.57 HAT 5/7 1734 1768 .. 1 34 [] 3.7 3.9e+02 HAT 6/7 1770 1802 .. 1 34 [] 21.1 0.15 HAT 7/7 1804 1839 .. 1 34 [] 12.8 23 Alignments of top-scoring domains: S1: domain 1 of 13, from 87 to 177: score 40.8, E = 1.8e-07 *->evGdvveGtVtsitpfGafVdlgngveGlihiselsddr........ +G+++ G V+++++ ++V l+ng+ G++ ++e++d ++++ +++ mKIAA0185 87 CEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEVCDAYtqklneqv 133 ........vkdpeevlkvGdevkvkVlsvdkek...grisLslk<-* ++++ ++ ++ e + +G v+++V s d +++++++ Ls mKIAA0185 134 aqeepledLLRLPELFSPGMLVRCVVSSLDVTEsgkKSVKLSVN 177 S1: domain 2 of 13, from 191 to 264: score 46.2, E = 4.2e-09 *->evGdvveGtVtsitpfGafVdlgn.gveGlihiselsddr.vkdpee ++G+ ++GtV s +++G+ Vd+g +g ++++ + + + k++ mKIAA0185 191 RPGMLLTGTVSSLEDHGYLVDIGVgGTRAFLSLKKAQEYIrQKNKGA 237 vlkvGdevkvkVlsvdkekgrisLslk<-* ++kvG+ ++++V +v g +sLs mKIAA0185 238 KFKVGQYLTCVVEEVKSNGGVVSLSVE 264 S1: domain 3 of 13, from 285 to 352: score 33.7, E = 2.6e-05 *->evGdvveGtVtsitpfGafVdlgngveGlihiselsddrvkdpeevl +G v++ V+++t fG+ +++ + Gl+ +l ++ + + mKIAA0185 285 LPGLLVKAQVQKVTQFGLQLNFLTFFKGLVDFMHLEPK----KMGSY 327 kvGdevkvkVlsvdkekgrisLslk<-* +++vk+++l v ++++ ++Lsl+ mKIAA0185 328 SSNQTVKACILCVHPRTRVVRLSLR 352 S1: domain 4 of 13, from 369 to 442: score 41.1, E = 1.5e-07 *->evGdvve.GtVtsitp.fGafVdlgngveGlihiselsddrvkdpee + G v+++ V++ ++ Ga+ +l +gv ++ +s+lsd + + e mKIAA0185 369 QLGAVLDdVPVQGFFKnAGAIFRLKDGVLAYARVSHLSDSKKAFNAE 415 vlkvGdevkvkVlsvdkekgrisLslk<-* +k+G + k++++++ + + Lsl+ mKIAA0185 416 AFKPGSTHKCRIIDYSQMDELALLSLR 442 S1: domain 5 of 13, from 457 to 528: score 82.1, E = 6.6e-20 *->evGdvveGtVtsitpfGafVdlgngveGlihiselsddrvkdpeevl ++G+vv+GtV i+pfG+ V++g+ + Gl++ +l+d k+pe+++ mKIAA0185 457 KIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKY 503 kvGdevkvkVlsvdkekgrisLslk<-* +Gdevk++Vl +d+e ++++++lk mKIAA0185 504 SPGDEVKCRVLLCDPEAKKLIMTLK 528 S1: domain 6 of 13, from 546 to 617: score 73.9, E = 2e-17 *->evGdvveGtVtsitpfGafVdlgngveGlihiselsddrvkdpeevl ++G +G++++++++G++V++ n v Gl+++ els ++ dpe v+ mKIAA0185 546 KPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVF 592 kvGdevkvkVlsvdkekgrisLslk<-* G++vkv Vls++++k r+ Ls + mKIAA0185 593 YTGQVVKVAVLSCEPSKERMLLSFR 617 S1: domain 7 of 13, from 640 to 713: score 22.8, E = 0.049 *->evGdvveGtVtsitpfGafVdlgn.gveGlihiselsddr..vkdpe ++G+ v+ +V + t+ G+ V + +++ ++++ +lsd+ ++ + mKIAA0185 640 RIGQLVDVKVLEKTKTGLEVAILPhNTPAFLPTPHLSDHAanGPLLH 686 evlkvGdevkvkVlsvdkekgrisLslk<-* l+ Gd++ ++ + e ++i L +k mKIAA0185 687 HWLQTGDTLHRVLCLSQSE-RHILLCRK 713 S1: domain 8 of 13, from 733 to 804: score 76.4, E = 3.5e-18 *->evGdvveGtVtsitpfGafVdlgngveGlihiselsddrvkdpeevl ++G+ ++G+V+ i+++G+fV+++ g++Gl +++ +sd++v p+e++ mKIAA0185 733 QPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHF 779 kvGdevkvkVlsvdkekgrisLslk<-* +G++v +kV++vd++k r+ Lsl+ mKIAA0185 780 VEGQTVVAKVTNVDESKQRMLLSLR 804 S1: domain 9 of 13, from 850 to 917: score 7.9, E = 11 *->evGdvveGtVtsitp.fGafVdlgngveGlihiselsddrvkdpeev +G+v++++V ++ +++ ++ ++ + ++ +s + + mKIAA0185 850 TPGMVLDAVVHEVLEdGSVVFSSDPVPDLVLRASRYHRAG-----QE 891 lkvGdevkvkVlsvdkekgrisLslk<-* +++G++ kv+Vl vd k + +sl mKIAA0185 892 VEPGQKKKVVVLHVDMLKLEVHVSLH 917 S1: domain 10 of 13, from 1049 to 1124: score 40.5, E = 2.3e-07 *->evGdvveGtVtsitpfGafVdlgngveGlihiselsddr..vkdpee +Gd v+Gt++ ++ ++V l +g+ G ih+s + dd + + p mKIAA0185 1049 AIGDKVTGTIKAVKATHVVVTLADGFVGCIHASRILDDVpvGTSPTT 1095 vlkvGdevkvkVlsvdkek..grisLslk<-* lk G++v+++V++ ++ k+++ + s+ mKIAA0185 1096 TLKAGKKVTARVIGGRDVKtsKFLPISHP 1124 [output cut off at A = 10 top alignments] //