hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpf/mpf00482/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0185 ( 1866 res) mpf00482 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- S1 S1 RNA binding domain 176.8 3.6e-49 5 TPR_2 Tetratricopeptide repeat 23.8 0.0041 2 Mad3_BUB1_I Mad3/BUB1 homology region 1 -45.8 0.058 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- S1 1/5 189 264 .. 1 79 [] 24.2 0.0031 S1 2/5 455 528 .. 1 79 [] 54.1 3.1e-12 S1 3/5 544 617 .. 1 79 [] 40.3 4.4e-08 S1 4/5 731 804 .. 1 79 [] 40.3 4.5e-08 S1 5/5 1047 1122 .. 1 79 [] 20.8 0.013 TPR_2 1/2 1686 1719 .. 1 34 [] 14.7 2.2 Mad3_BUB1_I 1/1 1630 1747 .. 1 133 [] -45.8 0.058 TPR_2 2/2 1756 1789 .. 1 34 [] 8.9 20 Alignments of top-scoring domains: S1: domain 1 of 5, from 189 to 264: score 24.2, E = 0.0031 *->kleeGdvveGtVtrvtklfGafVdlgengveGfvpiSeisrdkeyrv l++G+ ++GtV+++++ +G +Vd+g +g ++f+ ++ r mKIAA0185 189 ALRPGMLLTGTVSSLED-HGYLVDIGVGGTRAFLSLKKAQEYI--RQ 232 edpsevlkvGdevkvkvlkvDkergriiLSik<-* ++ ++kvG+ + +v +v g ++LS+ mKIAA0185 233 KNKGAKFKVGQYLTCVVEEVKSNGGVVSLSVE 264 S1: domain 2 of 5, from 455 to 528: score 54.1, E = 3.1e-12 *->kleeGdvveGtVtrvtklfGafVdlgengveGfv...piSeisrdke + ++G vv+GtV ++ + fG++V +g + + G+v++ ++ +i+++ mKIAA0185 455 DIKIGTVVKGTVLAIKP-FGILVKVG-EQIKGLVpsmHLADIMMK-- 497 yrvedpsevlkvGdevkvkvlkvDkergriiLSik<-* +p++++++Gdevk vl +D+e +++i+++k mKIAA0185 498 ----NPEKKYSPGDEVKCRVLLCDPEAKKLIMTLK 528 S1: domain 3 of 5, from 544 to 617: score 40.3, E = 4.4e-08 *->kleeGdvveGtVtrvtklfGafVdlgengveGfvpiSeisrdkeyrv ++G G++ rv + +G +V n+v G+vp +e+s ++ mKIAA0185 544 GAKPGLQTHGVIIRVKD-YGCIVKFY-NDVQGLVPKHELSTQ---HI 585 edpsevlkvGdevkvkvlkvDkergriiLSik<-* +dp++v++ G+ vkv vl +++ ++r+ LS + mKIAA0185 586 PDPETVFYTGQVVKVAVLSCEPSKERMLLSFR 617 S1: domain 4 of 5, from 731 to 804: score 40.3, E = 4.5e-08 *->kleeGdvveGtVtrvtklfGafVdlgengveGfvpiSeisrdkeyrv + ++G+ + G V+++ +G+fV+ g +G+ p +s++ v mKIAA0185 731 EIQPGMLLIGFVKCIKE-YGVFVQFP-SGLSGLSPKTIMSDK---FV 772 edpsevlkvGdevkvkvlkvDkergriiLSik<-* pse + G++v +kv++vD+ + r+ LS++ mKIAA0185 773 TTPSEHFVEGQTVVAKVTNVDESKQRMLLSLR 804 S1: domain 5 of 5, from 1047 to 1122: score 20.8, E = 0.013 *->kleeGdvveGtVtrvtklfGafVdlgengveGfvpiSeisrdkeyrv +l++Gd+v+Gt+++v + V l g G +++S i +d + + mKIAA0185 1047 SLAIGDKVTGTIKAVKA-THVVVTLA-DGFVGCIHASRILDDV-PVG 1090 edpsevlkvGdevkvkvlkvDkergriiLSik<-* +p+++lk G++v + v++ ++ + + L i+ mKIAA0185 1091 TSPTTTLKAGKKVTARVIGGRDVKTSKFLPIS 1122 TPR_2: domain 1 of 2, from 1686 to 1719: score 14.7, E = 2.2 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* ++ l+++y k ++y+eA e+y++ l+ + + mKIAA0185 1686 LKVFLHLADIYTKSEKYKEAGELYNRMLKRFRQE 1719 Mad3_BUB1_I: domain 1 of 1, from 1630 to 1747: score -45.8, E = 0.058 *->leqvrqafEeeiqeye.eegdDPLdlWlrYIkWteeayPqggggkqs +e+ r+ E+++++++ e+ L +W + +e+ y + q+ mKIAA0185 1630 IEKARAVAERALKTISfREEQEKLNVWVALLN-LENMYGS-----QE 1670 gLltlLERCvkyFedderYkNDpRyLKiWLkYie.lfs.nsldeprdiFq L ++ ER+v+y e LK++L++++ + ++++ e+ ++++ mKIAA0185 1671 SLTKVFERAVQYNEP----------LKVFLHLADiYTKsEKYKEAGELYN 1710 yLyskgIGtklAlfYeewAslLEsrgkfkkAdevfqlGi<-* ++++ + + + + + + r +v+q+++ mKIAA0185 1711 RMLKRF--RQEKAVWIKYGAFVLGRSQAGASHRVLQRAL 1747 TPR_2: domain 2 of 2, from 1756 to 1789: score 8.9, E = 20 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* +++ +++ ++lgd e+A++ +e l+ +P+ mKIAA0185 1756 VDVIVKFAQLEFQLGDVERAKAIFENTLSTYPKR 1789 //