hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08693/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0184  ( 1483 res)   mbg08693

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
AMP-binding  AMP-binding enzyme                         161.7    1.2e-44   1
DMAP_binding DMAP1-binding Domain                       -12.5       0.83   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
DMAP_binding   1/1       1    43 [.     1   116 []   -12.5     0.83
AMP-binding    1/1     930  1402 ..     1   377 []   161.7  1.2e-44

Alignments of top-scoring domains:
DMAP_binding: domain 1 of 1, from 1 to 43: score -12.5, E = 0.83
                   *->eaasLPaeVreRLaeLdldLsegdiTeKGyeKkKlkLLaeFLpadqr
                                                                ++++ 
   mKIAA0184     1    ------------------------------------------KSRA- 4    

                   tkiklqaprtdetkknlevpqnqlsnlesklkseelseevylekVkalLa
                                               ++ ++e+ +++v++e+V+a+La
   mKIAA0184     5 ----------------------------TNSRDERFRSDVHTEAVQAALA 26   

                   kelerengkpmpskersgl<-*
                   k++er++  pmpsk+rs+l   
   mKIAA0184    27 KYKERKM--PMPSKRRSAL    43   

AMP-binding: domain 1 of 1, from 930 to 1402: score 161.7, E = 1.2e-44
                   *->TYrELderanrlAaaLr.alGvgpGdrVaillpnspelvvailAvlk
                      T  +L+ ra+r+AaaL ++  + +Gd+Va+  p +++l++a++++l 
   mKIAA0184   930    TCIQLHKRAERVAAALMeKGRLDAGDHVALVYPPGVDLIAAFYGCLY 976  

                   aGaayvPldpsypa......erlayiledsgakvlltddalla.l.....
                    G+++v++ p +p++ +++   +  i+e s+++++l + a  + l+++++
   mKIAA0184   977 CGCVPVTVRPPHPQnlgttlPTVKMIVEVSKSACVLSTQAITRlLkskea 1026 

                   .....................s.e.p.ppvdpddlAyiiYTSGTTGkPKG
                   ++++++ + ++  ++++ +++  ++  +p++pd lAy+ ++  TTG   G
   mKIAA0184  1027 aaavdvrtwptildtddipkkKvAsIfRPPSPDVLAYLDFSVSTTGILAG 1076 

                   VmltHrnlvnlvaala.rf.l.pddaervllllppllhfdgsvweifgpL
                   V ++H++  +l++++  +++l p    r ++   ++++  g+ ++ ++++
   mKIAA0184  1077 VKMSHAATSALCRSIKlQCeLyPS---RQIAICLDPYCGLGFALWCLCSV 1123 

                   laGatlvlvpkfdryrdpealldliekykvTvlflvPtllrlllkape..
                   ++G++ vlvp+ ++  +++++l ++ +yk+ v+f+  ++++++ k    +
   mKIAA0184  1124 YSGHQSVLVPPLELESNVSLWLSAVSQYKARVTFCSYSVMEMCTKGLGaq 1173 

                   ........edlssLrlvlsgGealpp.elarrlrerfgs...........
                   ++  + ++ +ls +r++++++e  p+ +l + + ++f++ + + +  +++
   mKIAA0184  1174 tgalrmkgVNLSCVRTCMVVAEERPRiSLTQSFSKLFKDlglparavstt 1223 

                   ......ggvrlvngYGpTEttvvatanppg.p..............pgsi
                    + + ++++ l  + Gp  ttv + +  +++++ +  +++++++ +    
   mKIAA0184  1224 fgcrvnVAICLQGTTGPDPTTVYVDMRALRhDrvrlvergsphslpLMES 1273 

                   GrPlpgvevyvlDeeg.qpvppGvvGELyirGwpgvarGYlnrPelTaer
                   G+ lpgv+v +   e++ p+++   GE+++++ p+ a GY+   +  +e+
   mKIAA0184  1274 GKILPGVKVIIAHTETkGPLGDSHLGEIWVSS-PHNATGYYTVYG--EET 1320 

                   Fvadgwgp.......GeRmYrTGDlgrwdpD..........GyleilGRk
                     ad + ++ + +++++ + rTG lg ++  + ++ +++++  l+++G +
   mKIAA0184  1321 LHADHFSArlsfgdtQTIWARTGYLGFLRRTeltdasgerhDALYVVGSL 1370 

                   DdqvKirGerIepgEiEavLl.ahPgVaeAaV<-*
                   D+   +rG r  p +iE+ + +ah  +ae+aV   
   mKIAA0184  1371 DETLELRGMRYHPIDIETSVIrAHRSIAECAV    1402 

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