hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm03212/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0179  ( 640 res)   mpm03212

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Nop52    Nucleolar protein,Nop52                        153.8      3e-42   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Nop52      1/1       1   136 [.     1   230 []   153.8    3e-42

Alignments of top-scoring domains:
Nop52: domain 1 of 1, from 1 to 136: score 153.8, E = 3e-42
                   *->eevkiaqrLAscekvtRdRavRtiLrdyipartqrktGgfsdedLlk
                                                                     
   mKIAA0179     -    ----------------------------------------------- -    

                   lWKGLFYcmWmqDKpLlQeeLadriaqlvhsfnspeakhlknvFLFvqaF
                                +pL+                   a +l     F+q+F
   mKIAA0179     1 -------------EPLV------------------PAEYL-----FIQTF 14   

                   LqTMrrEWsgIDrlRLDKFymLiRrflresfefLkansWnedlikqllsi
                   +qTM+rEW+gID+l+LDK+ymLiR++lr+sfe+Lk+n+W+e++i+ +l+i
   mKIAA0179    15 WQTMNREWQGIDKLQLDKYYMLIRLVLRQSFEVLKRNAWEESQITLFLDI 64   

                   lqeevlspdskspgnGlkyHfidvFLeELLGneYFLksakvlageLtakq
                   l++e+lsp+s+sp nG+++H+idv+LeEL         ++v+++eL+a+q
   mKIAA0179    65 LMKEILSPESQSP-NGVRTHLIDVYLEEL---------TTVGGAELLADQ 104  

                   vlllldPFvkilaktkiDkyLvakikssvFeti<-*
                   +l+l+dPF++i+aktk D++Lv++++++vFe i   
   mKIAA0179   105 NLKLIDPFCRIAAKTK-DHTLVQTVARGVFEVI    136  

//