hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msk/msk06204/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0178  ( 236 res)   msk06204

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SMC_N    RecF/RecN/SMC N terminal domain                 49.9    1.4e-14   1
ABC_tran ABC transporter                                -54.2       0.45   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ABC_tran   1/1      41   211 ..     1   206 []   -54.2     0.45
SMC_N      1/1      33   215 ..     1   243 []    49.9  1.4e-14

Alignments of top-scoring domains:
ABC_tran: domain 1 of 1, from 41 to 211: score -54.2, E = 0.45
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->GevvalvGpNGaGKSTLLklisGllqiPdrteGeilidpGedltdls
                                       +   s + + +  +  + +    +   +++
   mKIAA0178    41    -----------------FQETSDEFE-A--ARKRAKKA-KQAFEQIK 66   

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   lealrklgrigvvpQdpqlflnptlTvrenlafglrlkgplekeerdefa
                   +e+ ++      +++ +  +        + ++ +l+ ++           
   mKIAA0178    67 KERFDR---FNACFESVATN-------IDEIYKALSRNSS---------- 96   

                RF xxxxxxxxxxxxxxxxxxxxxxxxxx xxxx          xxxxxxxxx
                   darveeaLervGladlldrlpqglDt.lgdg..........ggtLSGGqk
                           +++ l+++   +p  + ++++ +   ++++ +++++LSGG+k
   mKIAA0178    97 --------AQAFLGPENPEEP--YLDgINYNcvapgkrfrpMDNLSGGEK 136  

                RF xxxxxxxxxxxxxx    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   QRvalARaLltkpk....lLlLDEPTagLDpasraqllellrelrqrggt
                      alA +++ ++ ++ ++ +LDE  a+LD  +++++ ++++e  + +  
   mKIAA0178   137 TVAALALLFAIHSYkpapFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQ 186  

                RF xxxxxxxxxxxxxxxxxxx xx xxx   
                   vllitHdlefvdrladril.vl.enG<-*
                    ++i+   ef  + a  +++v++e+G   
   mKIAA0178   187 AIVISLKEEFYTK-AESLIgVYpEQG    211  

SMC_N: domain 1 of 1, from 33 to 215: score 49.9, E = 1.4e-14
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->ylkrielegFKSYagktiigpFspgFtaIvGPNGSGKSNiiDAIlFV
                      +l++++ +    +  + ++ +F+                   A    
   mKIAA0178    33    KLESVRDK----F--QETSDEFEA------------------AR--- 52   

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   LGersakkLRaeklsdLIhaGsksgasvnsAeVtitFlvqkivdnedkkh
                      r+    +a++    I +  +   + n +  ++         n d + 
   mKIAA0178    53 --KRAK---KAKQAFEQIKK--ERFDRFNACFESVA-------TNIDEI- 87   

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   iNSpflpideeeevsItRrvyrdGdqYSeYyINGknvtkIkdvseLLesa
                         +    +  s    ++ ++    e y++G n +         +  
   mKIAA0178    88 -----YKALSRN-SSAQAFLGPENP--EEPYLDGINYNC------VAPGK 123  

                RF xxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   GIske.nLSGGEKtLaALALlFAQGEyliqkykPaPFYvlDEiDAALDea
                    + + +nLSGGEKt+aALALlFA     i++ykPaPF+vlDEiDAALD++
   mKIAA0178   124 RFRPMdNLSGGEKTVAALALLFA-----IHSYKPAPFFVLDEIDAALDNT 168  

                RF xxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  
                   NvsrvAnyiktelskn.aQFIVIslReemfekAdrlvGvymvengvst<-
                   N+++vAnyik e+s++++Q IVIsl+ee++ kA++l+Gvy++++ +    
   mKIAA0178   169 NIGKVANYIK-EQSTCnFQAIVISLKEEFYTKAESLIGVYPEQGDCVI   215  

                RF  
                   *
                    
   mKIAA0178     -   -    

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