hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mid/mid01021/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0177  ( 1269 res)   mid01021

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
VWA      von Willebrand factor (vWF) type A domain       58.2    1.1e-12   1
BRCT     breast cancer carboxy-terminal domain           45.4    7.5e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BRCT       1/1      18    99 ..     1    93 []    45.4  7.5e-09
VWA        1/1     882  1045 ..     1   193 []    58.2  1.1e-12

Alignments of top-scoring domains:
BRCT: domain 1 of 1, from 18 to 99: score 45.4, E = 7.5e-09
                   *->sklfkgltfvltGddiegkfd.e.rdelkeliealGGkvt.svsrkk
                       ++f+++ f+l     ++ ++++++++l+  i+++GGk++       
   mKIAA0177    18    LGIFANCIFCLK----VKYLPrQqKKKLQTDIKENGGKFSfL----- 55   

                   l.pttthviv.spegkkletdnrsst.kllkaialgipiVteeWlldclk
                   l+p++thviv+s++              l  ++++ + i ++ ++ d+++
   mKIAA0177    56 LnPQCTHVIVdSADVLS--------RcHLNSIQKNDVQIANPAFIQDSVR 97   

                   kg<-*
                   ++   
   mKIAA0177    98 QR    99   

VWA: domain 1 of 1, from 882 to 1045: score 58.2, E = 1.1e-12
                   *->plDvvfllDgSgSmggnrfekvkefv.klveqld.gdrvglvqFssd
                      +  v+++lD+S+Sm g +f+++k+++   ++ l +   v ++qF+++
   mKIAA0177   882    KNEVIICLDCSSSMEGVTFTQAKQVAlYALSLLGeEQKVNIMQFGTG 928  

                   vrvefpln..sqskdallealaslsykglkdyslgggTnlg.ALqyalen
                    +++f+  +  ++ + + e ++s  +       + g+T++ + L+y    
   mKIAA0177   929 YKELFSYPkcITDSKMATEFIMSAAP-------SMGNTDFWkVLRYLSLL 971  

                   lfsesag.rrgagratkiSnvpkvliliTDGesndggddpedileaakel
                      +s+g r+              ++li+DG+ +     ++ +l+ +k+ 
   mKIAA0177   972 --YPSEGfRN--------------ILLISDGHLQ----SESLTLQLVKRN 1001 

                   krsgvkvfvigvgna.de.elkeiasep.gehvffdvsdvedlpslldll
                    ++  +vf+ +vg+  +++ l+++++++ g++             + +  
   mKIAA0177  1002 IQH-TRVFTCAVGSTaNRhILRTLSQCGaGVF----------EYFNSKSK 1040 

                   idlll<-*
                    ++ +   
   mKIAA0177  1041 HSWKK    1045 

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