hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf00222/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0173  ( 934 res)   mpf00222

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TTL      Tubulin-tyrosine ligase family                 516.8   1.6e-151   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TTL        1/1     387   682 ..     1   330 []   516.8 1.6e-151

Alignments of top-scoring domains:
TTL: domain 1 of 1, from 387 to 682: score 516.8, E = 1.6e-151
                   *->irlderyrllhqaiNhFPgsyeitrKDllwknikrqqkdfgrkgdef
                      ++++e     hq++NhFPgs++i+rKD+lw+n++r+q++fg+k  ef
   mKIAA0173   387    RSIRE-----HQKLNHFPGSFQIGRKDRLWRNLSRMQSRFGKK--EF 426  

                   dflprtfilptdlrefvdyfekreregqdntWIvKPsasaRGrGIritnk
                    f+p++filp+d + +++++e ++r    ++WIvKP+asaRG+GI +++k
   mKIAA0173   427 SFFPQSFILPQDSKLLRKAWESSSR----QKWIVKPPASARGIGIQVIHK 472  

                   lsqipkwvddfkdNpfvsqiqrrplvVQkYIerPLLidgeDvgkrKFDlR
                   +sq+p               +rrpl+VQ+Y+++P+Li+g     +KFDlR
   mKIAA0173   473 WSQLP---------------KRRPLLVQRYLHKPYLISG-----SKFDLR 502  

                   lYVLvtsvdPLriYvYregllRFAsvkYsp.lsdlddvemHLTNysiqkk
                   +YV+vts+dPLriY++++gl+RFAs+kYsp++++l++++mHLTNys++kk
   mKIAA0173   503 IYVYVTSYDPLRIYLFSDGLVRFASCKYSPsMKSLSNKFMHLTNYSVNKK 552  

                   ssnYsrlnedynepvghkwslqnlwlyleemgidkeeiwlqiesiiikti
                   +++Y+  n d+ +++ghkw l++lw+yl ++gi+ ++iw++i ++++kti
   mKIAA0173   553 NTEYQ-ANADETACQGHKWALKALWNYLSQKGINSDAIWEKIKDVVVKTI 601  

                   laae..iveasrlnvaplyncFELyGfDimlkwdDDenlkPwLLEVNasP
                   +++e+ + +   l+v+++y+c+EL+GfDiml    DenlkPw LEVN+sP
   mKIAA0173   602 ISSEpyVTNLLKLYVRRPYSCHELFGFDIML----DENLKPWVLEVNISP 647  

                   slhsttkldaelkaplirdvLnlalsvvppdkekdi<-*
                   slhs ++ld ++k ++ird+Ln ++ +v+p+ e +i   
   mKIAA0173   648 SLHSNSPLDISIKGQMIRDLLN-LAGFVLPNMEDII    682  

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