hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh02656/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0172  ( 934 res)   mbh02656

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Ank      Ankyrin repeat                                 123.9      3e-33   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Ank        1/5     743   773 ..     1    33 []    32.6  9.1e-06
Ank        2/5     777   813 ..     1    33 []    17.8     0.26
Ank        3/5     815   847 ..     1    33 []    44.9  1.8e-09
Ank        4/5     848   881 ..     1    33 []    31.5  1.9e-05
Ank        5/5     882   914 ..     1    33 []     7.2       19

Alignments of top-scoring domains:
Ank: domain 1 of 5, from 743 to 773: score 32.6, E = 9.1e-06
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G+T+LH+ +++ n ++vklLl+  Ad++ +d    
   mKIAA0172   743    NGNTALHYSVSHSNFQIVKLLLD--ADVCNVDH    773  

Ank: domain 2 of 5, from 777 to 813: score 17.8, E = 0.26
                   *->dGfTPLHlAalrg.....nlevvklLlsqGAdlnaqdd<-*
                       G+TP++lAal   + +++++vv++L s   d+na+     
   mKIAA0172   777    AGYTPIMLAALAAveaekDMQVVEELFS-CGDVNAKAS    813  

Ank: domain 3 of 5, from 815 to 847: score 44.9, E = 1.8e-09
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+T+L+lA+++g++++vk Ll +GAd+n+qdd   
   mKIAA0172   815    AGQTALMLAVSHGRIDMVKGLLACGADVNIQDD    847  

Ank: domain 4 of 5, from 848 to 881: score 31.5, E = 1.9e-05
                   *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-*
                      +G T+L++A+++g++e+vklLl + G++ ++ d+   
   mKIAA0172   848    EGSTALMCASEHGHVEIVKLLLAqPGCNGHLEDN    881  

Ank: domain 5 of 5, from 882 to 914: score 7.2, E = 19
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      dG T+L +A + g+++++ lL  +     aq     
   mKIAA0172   882    DGSTALSIALEAGHKDIAVLLYAHLNFSKAQSP    914  

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