hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/meh/meh00412/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0171 ( 475 res) meh00412 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ENTH ENTH domain 265.3 7.9e-76 1 Mucin Mucin-like glycoprotein -16.4 0.86 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ENTH 1/1 40 164 .. 1 140 [] 265.3 7.9e-76 Mucin 1/1 5 363 .. 1 151 [] -16.4 0.86 Alignments of top-scoring domains: ENTH: domain 1 of 1, from 40 to 164: score 265.3, E = 7.9e-76 *->yseaeikVreATnnDpwGPsgklmaeIaeaTyneklyvefeeimsvL yse+e+kVreATn+DpwGPsg+lm+eIa+aT++ y++f+e m++L mKIAA0171 40 YSEIESKVREATNDDPWGPSGQLMGEIAKATFM---YEQFPELMNML 83 wkRLnkddknegknWRhVYKaLtlLeYLlknGSErvvddcreniyHkfnI w R++ +d+ +knWR+VYK+L lL YL++nGSErvv+++re+iy ++ mKIAA0171 84 WSRML-KDN--KKNWRRVYKSLLLLAYLIRNGSERVVTSAREHIY---DL 127 rtLedFqyVfiDenGkmlrfDqGinVRkKAkelleLLnDderL<-* r+Le++++ +De+Gk DqGin+R+K+kel+e+ +Dd+rL mKIAA0171 128 RSLENYHF--VDEHGK----DQGINIRQKVKELVEFAQDDDRL 164 Mucin: domain 1 of 1, from 5 to 363: score -16.4, E = 0.86 *->MmtlrRlLcAlLvLaLCCCasVCvtAqe................... m + +L l ++ L C + C A +++ + ++ +++ ++ mKIAA0171 5 FM-CCSVLM-LIFMYLYVCVCTCTCAFSlcstnvvmnyseieskvre 49 .................................................. +++++ +++++ ++ + + ++ ++ + ++ ++++++ ++ mKIAA0171 50 atnddpwgpsgqlmgeiakatfmyeqfpelmnmlwsrmlkdnkknwrrvy 99 .................................................. ++ ++++++ ++ +++ + ++ ++ + ++++++++ + ++ mKIAA0171 100 ksllllaylirngservvtsarehiydlrslenyhfvdehgkdqginirq 149 .................................................. + ++ + +++++ ++++++ ++++++ + ++++ ++ + +++ ++++ mKIAA0171 150 kvkelvefaqdddrlreerkkakknkdkyvgvssdsvggfrynerydpep 199 .................................................. +++ +++ +++++ + +++ ++ +++ +++ +++ ++ +++++++++++ mKIAA0171 200 kskwdeewdknksafpfsdklgelsdkigstiddtiskfrrkdredsper 249 ....eGqydaavveaaeGqsktttttttttpttttttttweketTtttai ++++ + a +G+ k + t+tt+ t +t tTtt + mKIAA0171 250 csdsDEEKKARRGRSPKGEFKDEEETVTTKHIHITQATE----TTTTRHK 295 tttttktttttttttttTttteAPsknittseAPtttdtraPSsirkiDG t t + + T P +n t t+ +PS + mKIAA0171 296 RTANPSKTIDLGAAAHYTGDKASPDQNASTH---TPQSSAKPS----VPS 338 SLgssaWVcvPLLLlvsAlvyTAGaag<-* S +s V L s ++T G mKIAA0171 339 SKSSGDLVD--LFDGSSQSAATSGNGD 363 //