hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg00547/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0170  ( 1015 res)   mpg00547

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BRCT     breast cancer carboxy-terminal domain           26.6     0.0033   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BRCT       1/2     809   886 ..     1    93 []    20.2     0.29
BRCT       2/2     919   998 ..     1    93 []     6.5       43

Alignments of top-scoring domains:
BRCT: domain 1 of 2, from 809 to 886: score 20.2, E = 0.29
                   *->sklfkg....ltfvltGddiegkfde.rdelkeliealGGkvt.svs
                      +   +++++  ++ +tG           +  ++ + alGG   +sv+
   mKIAA0170   809    RRTKPNqetaPKVLFTG--------VmDSRGERAVLALGGSLAsSVN 847  

                   rkklpttthviv.spegkkletdnrsst.kllkaialgipiVteeWlldc
                        +++h+++++             t k+l+a+  gipi++  Wl+++
   mKIAA0170   848 -----EASHLVTdRIRR----------TvKFLCALGKGIPILSLNWLYQS 882  

                   lkkg<-*
                    k+g   
   mKIAA0170   883 RKAG    886  

BRCT: domain 2 of 2, from 919 to 998: score 6.5, E = 43
                   *->sklfkgltfvltGddiegkfd.e.rdelkeliealGGkvt.svsrkk
                      + l+++ ++++t      +  +++  ++ e+i ++GG++++s+++  
   mKIAA0170   919    RRLLEDYEIHVT------PGVqPpPPQMGEIISCCGGTFLpSMPH-- 957  

                   l.pttthviv.spegkkletdnrsstkllkaialgipiVteeWlldclkk
                          +i+ +++ ++++             +lg+p++++e+ll  + k
   mKIAA0170   958 SyKLHRVIITcTEDLPRCA----------IPSRLGLPLLSPEFLLTGVLK 997  

                   g<-*
                   +   
   mKIAA0170   998 Q    998  

//