hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj39332/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0168  ( 331 res)   mfj39332

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RA       Ras association (RalGDS/AF-6) domain            64.3    2.6e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RA         1/1     181   269 ..     1    98 []    64.3  2.6e-15

Alignments of top-scoring domains:
RA: domain 1 of 1, from 181 to 269: score 64.3, E = 2.6e-15
                   *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe
                      +++ + V+++   +   +++++++++T+++V+++lL Kf++ +++ e
   mKIAA0168   181    YNHKTSVFTPAYGS--VTNVRINSTMTTPQVLKLLLNKFKI-ENSAE 224  

                   dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqvrsrFlLrrre
                   +++L+    v+   ge + +L ++++Pl+++   ++++q  s  +L +++
   mKIAA0168   225 EFALY----VVHTSGEKQ-RLKSSDYPLIARILQGPCEQ-ISKVFLMEKD 268  

                   d<-*
                   +   
   mKIAA0168   269 Q    269  

//