hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf00537/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0165  ( 2133 res)   mpf00537

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
Peptidase_C50 Peptidase family C50                      536.2   2.3e-157   1
Herpes_UL6    Herpesvirus UL6 like                     -403.7       0.83   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Herpes_UL6      1/1     241   647 ..     1   600 []  -403.7     0.83
Peptidase_C50   1/1    1719  2080 ..     1   465 []   536.2 2.3e-157

Alignments of top-scoring domains:
Herpes_UL6: domain 1 of 1, from 241 to 647: score -403.7, E = 0.83
                   *->mlFfEILqGkygYvkGQtiYssLRssgvfsRQlfytlyktaLnsctY
                      +++++ L G+ g            s+g +s Q  + l+  +L +c+ 
   mKIAA0165   241    RHLIRVLVGEGGS-----------SPGPLSPQRALCLLEITLEHCR- 275  

                   edVaaDWqkheaaRGLqAeaiaaRwkkseEaeasrfaestFdsWaqTlkm
                    ++   W++h+++    A++  +R+++  E+++++   ++ +  +  l  
   mKIAA0165   276 -RLC--WNHHHRQ----AARAVERARNHLEKTSVAPSLQLCQMGVELLEA 318  

                   t......lldlvlgiIncilyskadGnaSYeRYvDWivtlGlVPvvrvkr
                   ++++++ + +l++++++ +++s+                      +    
   mKIAA0165   319 VeerpgaVAQLLRKAAAVLINSIE---------------------AP--S 345  

                   ppnaktvrkslasqlsaavlsgaslkekvirsilr..allaevtelletl
                   pp +++   s + +ls   ++g ++ +  +++il+  a+l   ++l++ l
   mKIAA0165   346 PPLRALYD-SCQFFLS-GLERGIRR-HCGLDAILSlfAFLGGYSSLVRHL 392  

                   sSvyIpDYdeVsIyYnyrsgeivaryavtGKrieveVlwpPviiggrvlF
                   + v            + +s++  ++    +++   + l++ ++++     
   mKIAA0165   393 REVS-----------EASSKQQQCLL---QMHFQGFHLFTGIVYDF---- 424  

                   DSPvQRLfgEvmaChrLrEHAKlCQLLNTaPvKvLvGsrkasenvyKdgA
                                       A  CQ            +  ++ ++ +dg 
   mKIAA0165   425 --------------------AQGCQ------------A--TELAQLVDGC 440  

                   araIlkhLEenektkksDaKkeLlkLLvNLaenKtvsGITDvVEsFltDv
                     a + +LE  e + ++            La+  +         s+ + +
   mKIAA0165   441 RSAAVWMLEALEGLSGGE-----------LADYLSMTA------SYTSNL 473  

                   snnLvDgssVDTrnkLFGkgGnggpgvgskgggar...............
                   + + +        +kL   +              + +++  ++ ++ +++
   mKIAA0165   474 AYSFFS-------QKLYEEA-------------CVisepvcqhlgsatsg 503  

                   .....PgqettqqglRkqVsNsvfKCLEgQINeQFDTIedLkkeNelllk
                     ++ P +e   + +R +V                   e+Lkk    l k
   mKIAA0165   504 acpevP-PEKLHRCFRLHV-------------------ESLKK----LGK 529  

                   klr.elEseLsrlreqalrapqaaadksggegagdsnlltlstlealnkl
                   + ++++   L           +a  + s +    ++   ++  ++a  ++
   mKIAA0165   530 QAQgCKMVTLWL---------AALKPYSLEHMVEPVTFWVRVKMDAS-RA 569  

                   qdshelidtsssvgddryVaNSFFSQYIPpyreldkrLtrLWEsElfrTF
                    d  el++ +     d+       S   P +++l  r       E +r +
   mKIAA0165   570 GDK-ELQLQTLR---DSL------SCWDPETQSLLLR-------EELRAY 602  

                   KLtpvvnNQGQElsVsYSndTIslLLgPFtysILrlrrlGeLItesyvsl
                   K ++  +  GQE                 +  I +l +l           
   mKIAA0165   603 KSVRADT--GQER----------------FNIICDLLEL----------- 623  

                   SleEIadavYkkSKIKHYRLevYitdIgakyc<-*
                   S eE a+ +   +        +Y+ ++++  c   
   mKIAA0165   624 SPEETAAGAWARA--------TYLVELAQVLC    647  

Peptidase_C50: domain 1 of 1, from 1719 to 2080: score 536.2, E = 2.3e-157
                   *->visidicdlkgdllllgsYfenwllLsrgllhsgssplnllrlPldi
                      v+++++++l++ +      ++n+llL+r  l+++++p+ ++++P++ 
   mKIAA0165  1719    VCVLALATLQPGT------LSNTLLLTR--LEKDNPPI-TVKIPTA- 1755 

                   vkeerhnsrdldeekltfsealdekWkcpwgstvIdyvaPlreiieesne
                               ++kl++s +l+e                +++i+++++e
   mKIAA0165  1756 ------------QNKLPLSAVLKE----------------FDAIQKDQKE 1777 

                   stspevtkkiktkedkrewWkerReaLDlrlkkLlanleeswLGgfkgll
                   ++s         +++kr wW++ R+aLD+r++ L++ lee++LG+++gll
   mKIAA0165  1778 NSS---------CTEKRVWWTG-RLALDQRMEALITALEEQVLGCWRGLL 1817 

                   lpkrldkkkaekfkkkfyniLeenlpsrrslvtggnraqfkgtvdpvlle
                   lp++ d+++a++++k     L+e l  +++            ++d +ll+
   mKIAA0165  1818 LPCSADPSLAQEASK-----LQELLRECGW-----------EYPDSTLLK 1851 

                   LfLgldpddegaedlledliyfvldilsfhgeenAyDEidfellhvllee
                   ++L++      +  + +d++++ + +++          +++++++vll e
   mKIAA0165  1852 VILSG-----ARILTSQDVQALACGLCP----------AQPDRAQVLLSE 1886 

                   alrkykqnevsekekeaqkrehtiLVLDkslhqfPWEslpiLqeqsevVs
                   a+++++++e       a++ +h++LVLDk+l+++PWEs piLq q+  V+
   mKIAA0165  1887 AVGQVQSQE-------APRSQHLVLVLDKDLQKLPWESTPILQAQP--VT 1927 

                   RvpSlscLlssellkkhkkqiklgrsidnrkPlidpskgfYiLNPdgDLk
                   R+pS+++Lls+ + k++  + +l +++d+++       +fY+LNP+++L+
   mKIAA0165  1928 RLPSFRFLLSYTVTKEAGASSVLSQGVDPQN-------TFYVLNPHSNLS 1970 

                   rTqerFrpFIyFknwegskpknWeGviGsvPseeefvkaLtnsDlFlYfG
                   +T+erFr    F+++ g     W+GviG+vPs ++++ aLt +Dl++Y+G
   mKIAA0165  1971 STEERFRA--SFSSETG-----WKGVIGEVPSLDQVQAALTERDLYIYAG 2013 

                   HGsGeQYvrgstikrldcnavsfLfGCsSaalkerGlylepyGaildYlm
                   HG+G+++++g+ ++rl+c+av++LfGCsSaal+++G+ le++G++l+Y+m
   mKIAA0165  2014 HGAGARFLDGQAVLRLSCRAVALLFGCSSAALAVHGN-LEGAGIVLKYIM 2062 

                   agcPmvvGnLWdVTDkdI<-*
                   agcP+++GnLWdVTD+dI   
   mKIAA0165  2063 AGCPLFLGNLWDVTDRDI    2080 

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