hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph02463/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0163  ( 466 res)   mph02463

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LDLa     Low-density lipoprotein receptor domain clas    51.2    1.4e-10   1
VWC      von Willebrand factor (vWF) type C domain       46.6    3.3e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LDLa       1/1      29    68 ..     1    47 []    51.2  1.4e-10
VWC        1/1     187   248 ..     1    75 []    46.6  3.3e-09

Alignments of top-scoring domains:
LDLa: domain 1 of 1, from 29 to 68: score 51.2, E = 1.4e-10
                   *->tCspgepneFqCgngr..CIplswvCDGddDCgDGSDEdpaidpenC
                      +C+pg   +F+C+ g+ +CIpl w+CDG + C+D SDE      ++C
   mKIAA0163    29    RCNPG---QFACHGGTiqCIPLPWQCDGWPTCEDKSDE------ADC 66   

                   ps<-*
                   p+   
   mKIAA0163    67 PE    68   

VWC: domain 1 of 1, from 187 to 248: score 46.6, E = 3.3e-09
                   *->CvhpnGevyrdgetWkpdk...pCqiCtCldgekvlCdkveCpppps
                      Cv+   + + d  ++ + k+++pC  CtC++ge  +C +  C+ p+ 
   mKIAA0163   187    CVD-IKDNVVDEGFYFTPKgddPCLSCTCHRGEPEMCVAALCERPQ- 231  

                   lpckdsdCpnperlpavaekppGeCCpeyrC<-*
                         +C+++       +k+p+eCC++ +C   
   mKIAA0163   232 ------GCQQY-------RKDPKECCKF-MC    248  

//