hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph02463/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0163  ( 466 res)   mph02463

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
Ldl_recept_a Low-density lipoprotein receptor domain     53.7    3.9e-12   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Ldl_recept_a   1/1      28    68 ..     1    43 []    53.7  3.9e-12

Alignments of top-scoring domains:
Ldl_recept_a: domain 1 of 1, from 28 to 68: score 53.7, E = 3.9e-12
                   *->stCggpdeFqCgsgr.rCIprswvCDGdpDCeDGSDEslenCaa<-*
                       +C  p++F C++g  +CIp  w+CDG p CeD SDE  ++C+    
   mKIAA0163    28    LRCN-PGQFACHGGTiQCIPLPWQCDGWPTCEDKSDE--ADCPE    68   

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