hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh03558/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0162  ( 1229 res)   mbh03558

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SH2      Src homology 2 domains                          52.1    7.3e-11   1
S1       Ribosomal protein S1-like RNA-binding domain    26.1     0.0047   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
S1         1/1     724   785 ..     1    72 []    26.1   0.0047
SH2        1/1     835   924 ..     1    87 []    52.1  7.3e-11

Alignments of top-scoring domains:
S1: domain 1 of 1, from 724 to 785: score 26.1, E = 0.0047
                   *->evGdvveGtVtsitpfGafVdlgngveGlihiselsddrvkdpeevl
                       +G+ +          G+  +l+ngv+G+i+   lsd+ vk+pee++
   mKIAA0162   724    CPGQAI----------GVKTRLDNGVTGFIPTKFLSDKVVKRPEERV 760  

                   kvGdevkvkVlsvdkekgrisLslk<-*
                   kvG +v +++ ++d ek + +L+++   
   mKIAA0162   761 KVGMTVHCRIMKIDIEKFSADLTCR    785  

SH2: domain 1 of 1, from 835 to 924: score 52.1, E = 7.3e-11
                   *->epWYHGkisReeAEklLkneggpdGtFLvRdSesspgdyvLSvrvk.
                      +p +H +i+ ++AEk+  +  +  G+ ++R+S++  ++++++++v  
   mKIAA0162   835    HPSFH-NINFKQAEKMMET--MDQGDVIIRPSSKGENHLTVTWKVSa 878  

                   gkvkHyrIrrtdd.gkfylggt...prrkFpsL.eLvehYqknslg<-*
                   g ++H  +r++++++ f+lg t   +++ F++L+e+v+ Y ++  +   
   mKIAA0162   879 GIYQHVDVREEGKeNAFSLGATlwiNSEEFEDLdEIVARYVQPMAS    924  

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