hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh03558/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0162  ( 1229 res)   mbh03558

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
S1       S1 RNA binding domain                            5.3       0.45   1
SH2      SH2 domain                                       1.1      0.034   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
S1         1/1     712   785 ..     1    79 []     5.3     0.45
SH2        1/1     838   918 ..     1    82 []     1.1    0.034

Alignments of top-scoring domains:
S1: domain 1 of 1, from 712 to 785: score 5.3, E = 0.45
                   *->kleeGdvveGtVtrvtklfGafVdlgengveGfvpiSeisrdkeyrv
                      + e+ + ++   +      G+  +l+ ngv+Gf+p + +s++    v
   mKIAA0162   712    LSEVWNHFDSGSCPGQA-IGVKTRLD-NGVTGFIPTKFLSDK---VV 753  

                   edpsevlkvGdevkvkvlkvDkergriiLSik<-*
                   + p+e++kvG +v   + k+D e+ +++L+++   
   mKIAA0162   754 KRPEERVKVGMTVHCRIMKIDIEKFSADLTCR    785  

SH2: domain 1 of 1, from 838 to 918: score 1.1, E = 0.034
                   *->WyhGkIsRkeAErlLlnpggkdGtFLvReSestpGdYtLSVrddgpq
                        + +I+ k+AE++     +  G+ ++R+S+  +++ t++++     
   mKIAA0162   838    --FHNINFKQAEKMMET--MDQGDVIIRPSSKGENHLTVTWKVSAG- 879  

                   gdrVkHyrIqsldng.......gyyitggvkFssLpeLvehY<-*
                       +H  +++++ ++  + + ++ i  ++ F++L e+v  Y   
   mKIAA0162   880 --IYQHVDVREEGKEnafslgaTLWINSEE-FEDLDEIVARY    918  

//