hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj06138/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0161  ( 350 res)   mfj06138

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
IBR      IBR domain                                      90.9    2.6e-23   1
zf-C3HC4 Zinc finger, C3HC4 type (RING finger)           10.0      0.093   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C3HC4   1/1      78   128 ..     1    50 []    10.0    0.093
IBR        1/1     149   214 ..     1    72 []    90.9  2.6e-23

Alignments of top-scoring domains:
zf-C3HC4: domain 1 of 1, from 78 to 128: score 10.0, E = 0.093
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlss......
                      C +Cl+e+  +     +i  C +      fC  Cl+++++   +++ 
   mKIAA0161    78    CKLCLGEYPAEQ--MTTIAQCQCI-----FCTLCLKQYVELlikegl 117  

                   sgnttCp..lC<-*
                   ++  +Cp+  C   
   mKIAA0161   118 ETAISCPdaAC    128  

IBR: domain 1 of 1, from 149 to 214: score 90.9, E = 2.6e-23
                   *->eKYerlllesyvesnkdlkwCPapdCsyivrvtdlssgskeepssrr
                      ++Y++l++e++v+ +++++wCPa+ C+++++++d +     ++ +++
   mKIAA0161   149    QRYKKLQFEREVLFDPCRTWCPASTCQAVCQLQDIG-----LQTPQL 190  

                   veCskGCgfeFCfnCkeewHgplsC<-*
                   v+C++ C++eFC+ Ck+ wH+++ C   
   mKIAA0161   191 VQCKA-CDMEFCSACKARWHPGQGC    214  

//