hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm06349/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0159  ( 1397 res)   mpm06349

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HEAT     HEAT repeat                                     28.1     0.0002   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HEAT       1/4     364   400 ..     1    36 []    12.9      3.8
HEAT       2/4     405   440 ..     1    36 []     6.2       33
HEAT       3/4    1003  1043 ..     1    36 []     6.1       34
HEAT       4/4    1086  1118 ..     1    36 []     6.0       35

Alignments of top-scoring domains:
HEAT: domain 1 of 4, from 364 to 400: score 12.9, E = 3.8
                   *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      ++++d++l +l+ + +D ++ VR  +++ +++++++    
   mKIAA0159   364    ReTRDQFLDILQAHGHDVNSFVRSRVLQLFARIVQQK    400  

HEAT: domain 2 of 4, from 405 to 440: score 6.2, E = 33
                   *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-*
                       +++  ++ l +  l D++  V ++A++ L++++ +    
   mKIAA0159   405    TrFQ-AVVALAVGRLADKSVLVCKNAIQLLASFLANN    440  

HEAT: domain 3 of 4, from 1003 to 1043: score 6.1, E = 34
                   *->e.lldellplllklln....DpdpeVReaAaeaLgalaevl<-*
                      +++l  ++plllk +n+++  ++pe  +aA  aLg+++ +    
   mKIAA0159  1003    NqVLAAFVPLLLKVCNnpglYSNPELCAAASLALGKFCMIS    1043 

HEAT: domain 4 of 4, from 1086 to 1118: score 6.0, E = 35
                   *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      +++     p+l   l+Dp   VR++A   + +l+ +    
   mKIAA0159  1086    DpWT----PHLYARLRDPAQQVRKTAGLVMTHLILKD    1118 

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